The 2.0 version of rSNPBase

Variant report

Variant rs557213396
Chromosome Location chr16:48611818-48611819
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr16:48583800-48617800 Weak transcription H9 Cell Line embryonic stem cell
2 chr16:48591400-48617200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr16:48592600-48613400 Weak transcription ES-I3 Cell Line embryonic stem cell
4 chr16:48594000-48617800 Weak transcription iPS-15b Cell Line embryonic stem cell
5 chr16:48595200-48624000 Weak transcription H1 Cell Line embryonic stem cell
6 chr16:48596000-48613600 Weak transcription Fetal Intestine Large intestine
7 chr16:48596000-48624400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr16:48596200-48612800 Weak transcription Fetal Muscle Trunk muscle
9 chr16:48596200-48612800 Weak transcription Placenta Placenta
10 chr16:48596200-48615200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
11 chr16:48596400-48613400 Weak transcription Rectal Mucosa Donor 29 rectum
12 chr16:48596400-48615000 Weak transcription HUES48 Cell Line embryonic stem cell
13 chr16:48596400-48617200 Weak transcription NH-A brain
14 chr16:48596600-48612200 Weak transcription HUES6 Cell Line embryonic stem cell
15 chr16:48596800-48624400 Weak transcription iPS-20b Cell Line embryonic stem cell
16 chr16:48603000-48614200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr16:48605000-48613000 Enhancers Primary T killer naive cells fromperipheralblood blood
18 chr16:48605000-48613200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
19 chr16:48605000-48630200 Weak transcription Spleen Spleen
20 chr16:48605200-48612400 Enhancers Primary T helper cells fromperipheralblood blood
21 chr16:48605400-48613400 Weak transcription Cortex derived primary cultured neurospheres brain
22 chr16:48607000-48613400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
23 chr16:48607800-48613000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
24 chr16:48608200-48613000 Enhancers Primary T helper naive cells fromperipheralblood blood
25 chr16:48608200-48613000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr16:48608400-48612200 Enhancers Left Ventricle heart
27 chr16:48608600-48612200 Enhancers HMEC breast
28 chr16:48608600-48613200 Enhancers Primary T helper 17 cells PMA-I stimulated --
29 chr16:48608600-48613600 Enhancers Primary T helper naive cells from peripheral blood blood
30 chr16:48609000-48612800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr16:48609000-48613200 Weak transcription Duodenum Mucosa Duodenum
32 chr16:48609200-48612000 Enhancers Pancreas Pancrea
33 chr16:48609800-48612800 Weak transcription Duodenum Smooth Muscle Duodenum
34 chr16:48609800-48612800 Weak transcription Fetal Adrenal Gland Adrenal Gland
35 chr16:48609800-48613200 Weak transcription Brain Anterior Caudate brain
36 chr16:48609800-48613400 Weak transcription HUES64 Cell Line embryonic stem cell
37 chr16:48609800-48614000 Weak transcription Brain Inferior Temporal Lobe brain
38 chr16:48609800-48624200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
39 chr16:48609800-48624200 Weak transcription Fetal Thymus thymus
40 chr16:48609800-48624400 Weak transcription Thymus Thymus
41 chr16:48610000-48612800 Weak transcription Pancreatic Islets Pancreatic Islet
42 chr16:48610000-48613000 Weak transcription Skeletal Muscle Male skeletal muscle
43 chr16:48610000-48617800 Weak transcription Fetal Heart heart
44 chr16:48610200-48612200 Enhancers Primary monocytes fromperipheralblood blood
45 chr16:48610400-48612200 Enhancers Brain Hippocampus Middle brain
46 chr16:48610400-48612200 Weak transcription GM12878-XiMat blood
47 chr16:48610400-48612400 Enhancers Primary T cells fromperipheralblood blood
48 chr16:48610400-48617200 Weak transcription Stomach Smooth Muscle stomach
49 chr16:48610600-48612600 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
50 chr16:48610800-48612000 Enhancers Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015