Variant report

Variant	rs55722769
Chromosome Location	chr20:13849702-13849703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11698034	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17263416	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6134992	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73085418	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916202	chr20:13421724-14043615	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1066810	chr20:13451869-14432454	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv912689	chr20:13570331-14155881	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1059221	chr20:13589432-13977327	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv531479	chr20:13632491-14434432	Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:13843600-13850800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr20:13843800-13850000	Enhancers	NHDF-Ad	bronchial
3	chr20:13844200-13851800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr20:13845600-13849800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr20:13845600-13850600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr20:13846600-13854600	Weak transcription	Right Atrium	heart
7	chr20:13847000-13853400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr20:13847000-13854200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr20:13847200-13851200	Weak transcription	Psoas Muscle	Psoas
10	chr20:13847200-13854600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr20:13847200-13855200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr20:13847200-13855400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr20:13847400-13849800	Weak transcription	Brain Anterior Caudate	brain
14	chr20:13847400-13849800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr20:13847400-13850000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr20:13848000-13854600	Weak transcription	Fetal Stomach	stomach
17	chr20:13848200-13851800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr20:13848400-13850000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr20:13848400-13851200	Enhancers	Adipose Nuclei	Adipose
20	chr20:13848400-13854400	Weak transcription	Colon Smooth Muscle	Colon
21	chr20:13848600-13849800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr20:13848600-13854200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr20:13849200-13850000	Enhancers	Primary B cells from cord blood	blood
24	chr20:13849200-13851400	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr20:13849600-13849800	Enhancers	Ovary	ovary
26	chr20:13849600-13851200	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links