Variant report

Variant	rs557231998
Chromosome Location	chr7:66093956-66093957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:147735355..147736222-chr7:66093511..66094057,2	HCT-116	colon:
2	chr7:66055866..66057599-chr7:66093523..66095048,2	K562	blood:
3	chr7:66054686..66058308-chr7:66092199..66095155,8	MCF-7	breast:
4	chr7:66055516..66058509-chr7:66093670..66096346,2	MCF-7	breast:
5	chr5:98264226..98265182-chr7:66093354..66094059,2	Hela-S3	cervix:
6	chr16:30366233..30367218-chr7:66093220..66094003,2	Hela-S3	cervix:
7	chr7:66091898..66097382-chr7:66117985..66122507,10	K562	blood:
8	chr10:65225136..65225808-chr7:66093381..66094332,2	Hela-S3	cervix:
9	chr7:66092683..66094985-chr7:66385486..66387762,2	K562	blood:
10	chr7:66093040..66094130-chr9:130213730..130214325,3	Hela-S3	cervix:
11	chr7:66091844..66094640-chr7:66118336..66122170,5	MCF-7	breast:
12	chr5:43066820..43067773-chr7:66093320..66094153,2	Hela-S3	cervix:
13	chr17:2303928..2304554-chr7:66093443..66094027,2	Hela-S3	cervix:
14	chr18:60188960..60191290-chr7:66092438..66094861,2	MCF-7	breast:
15	chr1:181057562..181058294-chr7:66093557..66094108,2	NB4	blood:
16	chr7:66092456..66095854-chr7:66117562..66119715,4	MCF-7	breast:
17	chr16:66583323..66584120-chr7:66093411..66094042,2	NB4	blood:

No data

Variant related genes	Relation type
ENSG00000172262	Chromatin interaction
ENSG00000248489	Chromatin interaction
ENSG00000162783	Chromatin interaction
ENSG00000260219	Chromatin interaction
ENSG00000199879	Chromatin interaction
ENSG00000169217	Chromatin interaction
ENSG00000232559	Chromatin interaction
ENSG00000070444	Chromatin interaction
ENSG00000177738	Chromatin interaction
ENSG00000141664	Chromatin interaction
ENSG00000148356	Chromatin interaction
ENSG00000166548	Chromatin interaction
ENSG00000106609	Chromatin interaction
ENSG00000226824	Chromatin interaction
ENSG00000171988	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1035107	chr7:65814901-66114919	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv538909	chr7:65814901-66114919	Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	esv3430888	chr7:66092917-66095465	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases
6	esv3327134	chr7:66092942-66095490	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66092000-66094400	Active TSS	Sigmoid Colon	Sigmoid Colon
2	chr7:66092200-66094600	Active TSS	Brain Anterior Caudate	brain
3	chr7:66092200-66094800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:66092400-66094400	Active TSS	Primary T cells from cord blood	blood
5	chr7:66092400-66094800	Active TSS	Brain Angular Gyrus	brain
6	chr7:66092400-66094800	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr7:66092400-66094800	Active TSS	Rectal Smooth Muscle	rectum
8	chr7:66092400-66095000	Active TSS	A549	lung
9	chr7:66092400-66095200	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr7:66092600-66094400	Active TSS	Muscle Satellite Cultured Cells	--
11	chr7:66092600-66094600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:66092600-66094600	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr7:66092600-66094800	Active TSS	Placenta Amnion	Placenta Amnion
14	chr7:66092600-66095000	Active TSS	Colonic Mucosa	Colon
15	chr7:66092800-66094400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
16	chr7:66092800-66094400	Active TSS	Primary T killer memory cells from peripheral blood	blood
17	chr7:66092800-66094400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:66092800-66094400	Active TSS	Ovary	ovary
19	chr7:66092800-66094400	Active TSS	Thymus	Thymus
20	chr7:66092800-66094400	Active TSS	Spleen	Spleen
21	chr7:66092800-66094600	Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr7:66092800-66094600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr7:66092800-66094600	Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr7:66092800-66094600	Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr7:66092800-66094600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
26	chr7:66092800-66094600	Active TSS	Cortex derived primary cultured neurospheres	brain
27	chr7:66092800-66094600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr7:66092800-66094600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr7:66092800-66094600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr7:66092800-66094600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr7:66092800-66094600	Active TSS	Brain Substantia Nigra	brain
32	chr7:66092800-66094600	Active TSS	Fetal Brain Female	brain
33	chr7:66092800-66094600	Active TSS	Fetal Kidney	kidney
34	chr7:66092800-66094600	Active TSS	Right Ventricle	heart
35	chr7:66092800-66094600	Active TSS	HSMM	muscle
36	chr7:66092800-66094600	Active TSS	NH-A	brain
37	chr7:66092800-66094800	Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chr7:66092800-66094800	Active TSS	H9 Cell Line	embryonic stem cell
39	chr7:66092800-66094800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:66092800-66094800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr7:66092800-66094800	Active TSS	iPS-15b Cell Line	embryonic stem cell
42	chr7:66092800-66094800	Active TSS	Aorta	Aorta
43	chr7:66092800-66094800	Active TSS	Colon Smooth Muscle	Colon
44	chr7:66092800-66094800	Active TSS	Left Ventricle	heart
45	chr7:66092800-66094800	Active TSS	Psoas Muscle	Psoas
46	chr7:66092800-66095000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
47	chr7:66092800-66095000	Active TSS	H1 Cell Line	embryonic stem cell
48	chr7:66092800-66095000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr7:66092800-66095000	Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr7:66092800-66095000	Active TSS	HUES6 Cell Line	embryonic stem cell

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