Variant report

Variant	rs55723411
Chromosome Location	chr9:7124164-7124165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr9:7124148-7124451	HepG2	liver:	n/a	chr9:7124299-7124310 chr9:7124298-7124313 chr9:7124298-7124314
2	MYC	chr9:7123715-7124273	MCF10A-Er-Src	breast:	n/a	chr9:7123778-7123787
3	FOS	chr9:7123538-7124194	MCF10A-Er-Src	breast:	n/a	chr9:7123931-7123939 chr9:7123930-7123940 chr9:7123930-7123940 chr9:7123931-7123939 chr9:7123931-7123938
4	FOS	chr9:7123745-7124242	MCF10A-Er-Src	breast:	n/a	chr9:7123931-7123939 chr9:7123930-7123940 chr9:7123930-7123940 chr9:7123931-7123939 chr9:7123931-7123938
5	FOSL1	chr9:7123758-7124244	HCT-116	colon:	n/a	chr9:7123931-7123939 chr9:7123930-7123940 chr9:7123930-7123940 chr9:7123931-7123939 chr9:7123931-7123938
6	FOSL1	chr9:7123576-7124288	HCT-116	colon:	n/a	chr9:7123931-7123939 chr9:7123930-7123940 chr9:7123930-7123940 chr9:7123931-7123939 chr9:7123931-7123938
7	FOS	chr9:7123683-7124171	MCF10A-Er-Src	breast:	n/a	chr9:7123931-7123939 chr9:7123930-7123940 chr9:7123930-7123940 chr9:7123931-7123939 chr9:7123931-7123938
8	STAT3	chr9:7123687-7124182	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
KDM4C	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10114306	1.00[AMR][1000 genomes]
rs10114363	1.00[AMR][1000 genomes]
rs10121556	1.00[AMR][1000 genomes]
rs12343598	1.00[AMR][1000 genomes]
rs12346587	1.00[AMR][1000 genomes]
rs12350651	1.00[AMR][1000 genomes]
rs58724848	1.00[AMR][1000 genomes]
rs7019191	1.00[AMR][1000 genomes]
rs7023243	1.00[AMR][1000 genomes]
rs7872996	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1023906	chr9:6731786-7372132	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv613259	chr9:7032776-7541338	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1015874	chr9:7048807-7434890	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv539971	chr9:7048807-7434890	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv869932	chr9:7068359-7133384	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv892189	chr9:7091968-7150997	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv892190	chr9:7094860-7186074	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7088800-7128000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr9:7103000-7148600	Strong transcription	Primary B cells from peripheral blood	blood
3	chr9:7103800-7128800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr9:7104200-7128200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:7104200-7148200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr9:7104400-7128000	Weak transcription	Aorta	Aorta
7	chr9:7104400-7128000	Weak transcription	Lung	lung
8	chr9:7104400-7135400	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:7104400-7137600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr9:7104400-7144600	Weak transcription	Brain Anterior Caudate	brain
11	chr9:7104600-7148000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:7104800-7138200	Weak transcription	HSMM	muscle
13	chr9:7104800-7142800	Weak transcription	Osteobl	bone
14	chr9:7104800-7153200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr9:7105000-7133600	Weak transcription	Fetal Stomach	stomach
16	chr9:7105000-7146600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr9:7105200-7130200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr9:7105400-7128200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr9:7105600-7128200	Weak transcription	Brain Hippocampus Middle	brain
20	chr9:7105600-7133200	Weak transcription	Ovary	ovary
21	chr9:7105600-7136800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr9:7105800-7128200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr9:7105800-7128200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr9:7105800-7128400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr9:7105800-7128600	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr9:7105800-7129400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr9:7106200-7147600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr9:7110800-7127600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr9:7113400-7147800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr9:7114400-7124200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr9:7115000-7129600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr9:7115200-7130000	Weak transcription	Fetal Intestine Small	intestine
33	chr9:7116000-7134800	Weak transcription	Brain Substantia Nigra	brain
34	chr9:7116200-7145200	Weak transcription	Colon Smooth Muscle	Colon
35	chr9:7118200-7147800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr9:7118600-7136600	Weak transcription	NHDF-Ad	bronchial
37	chr9:7118800-7129600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr9:7119000-7133600	Weak transcription	Placenta	Placenta
39	chr9:7119000-7144600	Weak transcription	Right Ventricle	heart
40	chr9:7119200-7124200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr9:7119200-7127600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr9:7119200-7128600	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr9:7119200-7136400	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr9:7119200-7139800	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr9:7120000-7128800	Weak transcription	Psoas Muscle	Psoas
46	chr9:7120200-7128000	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr9:7120200-7128200	Weak transcription	Small Intestine	intestine
48	chr9:7120400-7129600	Weak transcription	HSMMtube	muscle
49	chr9:7121600-7124800	Weak transcription	Pancreas	Pancrea
50	chr9:7121600-7128000	Weak transcription	Spleen	Spleen

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