Variant report

Variant	rs55724547
Chromosome Location	chr14:56707004-56707005
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56682950..56686816-chr14:56706117..56709663,3	K562	blood:
2	chr14:56152134..56154942-chr14:56705477..56707691,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10483657	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs171410	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17691274	0.92[AFR][1000 genomes]
rs17832621	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs242397	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs242399	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs242401	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs242403	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs242404	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs242405	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs242408	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs242409	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs242411	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs242412	0.88[ASN][1000 genomes]
rs242415	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs242416	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3783655	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3783673	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3783677	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3783682	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3783683	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3825619	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs55764336	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56280775	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs56387985	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs56401225	1.00[AFR][1000 genomes]
rs57405940	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58069847	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72714350	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72717977	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72717992	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1844788	chr14:56594420-56771207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1044886	chr14:56689682-56834648	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv542104	chr14:56689682-56834648	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56688000-56707800	Weak transcription	Spleen	Spleen
2	chr14:56689600-56710000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:56689800-56715800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr14:56692400-56710000	Weak transcription	Fetal Stomach	stomach
5	chr14:56693200-56724400	Weak transcription	Gastric	stomach
6	chr14:56694000-56723000	Weak transcription	Lung	lung
7	chr14:56696000-56715600	Weak transcription	Fetal Thymus	thymus
8	chr14:56702600-56717600	Weak transcription	Ovary	ovary
9	chr14:56704000-56716800	Weak transcription	Fetal Intestine Small	intestine
10	chr14:56704200-56707200	Weak transcription	Primary B cells from cord blood	blood
11	chr14:56704400-56716600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr14:56704600-56710600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr14:56704600-56710800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr14:56704600-56715200	Weak transcription	Aorta	Aorta
15	chr14:56704600-56716000	Weak transcription	Primary T cells from cord blood	blood
16	chr14:56704800-56710000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr14:56704800-56710000	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr14:56705400-56709000	Strong transcription	Dnd41	blood
19	chr14:56705600-56710600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr14:56705800-56710800	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr14:56706400-56707200	Enhancers	Pancreas	Pancrea
22	chr14:56706400-56707400	Strong transcription	Thymus	Thymus
23	chr14:56707000-56707200	Enhancers	H1 Cell Line	embryonic stem cell
24	chr14:56707000-56707200	Weak transcription	Left Ventricle	heart

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