Variant report

Variant	rs557277195
Chromosome Location	chr2:212771727-212771728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:212770483..212772288-chr2:212787078..212789337,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:41 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv834525	chr2:212693190-212860356	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv584323	chr2:212731514-212783175	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv584324	chr2:212766614-212773932	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv584325	chr2:212768779-212772954	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv584326	chr2:212768779-212773495	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv584327	chr2:212768779-212773569	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv1848923	chr2:212768779-212774540	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv1847998	chr2:212768779-212774751	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv1851182	chr2:212768779-212774751	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv3459090	chr2:212771110-212775328	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv3459091	chr2:212771155-212775274	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv3459093	chr2:212771183-212775353	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv3459092	chr2:212771225-212775161	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv3459094	chr2:212771225-212775161	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv821893	chr2:212771504-212775254	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv17890	chr2:212771626-212775095	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
18	nsv584328	chr2:212771670-212773120	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
19	nsv584329	chr2:212771670-212773332	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
20	nsv584330	chr2:212771670-212773495	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
21	nsv584331	chr2:212771670-212773569	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
22	nsv584332	chr2:212771670-212773932	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
23	nsv584333	chr2:212771670-212774107	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
24	nsv584334	chr2:212771670-212774457	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
25	esv1843892	chr2:212771670-212774540	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
26	esv1844716	chr2:212771670-212774540	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
27	esv1846099	chr2:212771670-212774540	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
28	esv1847062	chr2:212771670-212774540	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
29	esv1847876	chr2:212771670-212774540	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
30	nsv584335	chr2:212771670-212774540	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
31	esv1843787	chr2:212771670-212774751	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
32	esv1844200	chr2:212771670-212774751	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
33	esv1846400	chr2:212771670-212774751	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
34	esv1846680	chr2:212771670-212774751	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
35	esv1847626	chr2:212771670-212774751	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
36	esv1847757	chr2:212771670-212774751	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
37	esv1847972	chr2:212771670-212774751	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
38	esv1847974	chr2:212771670-212774751	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
39	esv1850744	chr2:212771670-212774751	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
40	nsv584336	chr2:212771670-212774751	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
41	esv1848560	chr2:212771670-212783175	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212769200-212772000	Weak transcription	Fetal Heart	heart
2	chr2:212771400-212771800	Enhancers	Brain Substantia Nigra	brain
3	chr2:212771600-212771800	Enhancers	Brain Anterior Caudate	brain
4	chr2:212771600-212772200	Enhancers	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links