Variant report

Variant	rs557290370
Chromosome Location	chr4:8332395-8332396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:8327689..8329411-chr4:8330180..8333204,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002794	chr4:8110083-8490934	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv878595	chr4:8154534-8390646	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv878601	chr4:8214767-8440951	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv878602	chr4:8214767-8448992	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1009011	chr4:8225669-8424831	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv470013	chr4:8315938-8377058	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	esv3402175	chr4:8330602-8333400	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv878605	chr4:8332057-8378959	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8325600-8338400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:8326400-8332600	Weak transcription	Spleen	Spleen
3	chr4:8327200-8332600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:8327400-8332600	Weak transcription	Esophagus	oesophagus
5	chr4:8327600-8332400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:8330400-8334200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr4:8331000-8333600	Enhancers	Fetal Muscle Leg	muscle
8	chr4:8331000-8333600	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr4:8331000-8334200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:8331200-8333200	Enhancers	Fetal Heart	heart
11	chr4:8331200-8334600	Enhancers	Right Ventricle	heart
12	chr4:8331400-8332400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:8331400-8333400	Enhancers	Psoas Muscle	Psoas
14	chr4:8331400-8333600	Enhancers	Left Ventricle	heart
15	chr4:8331600-8333200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr4:8331600-8333200	Enhancers	Ovary	ovary
17	chr4:8331600-8333400	Enhancers	Brain Hippocampus Middle	brain
18	chr4:8332000-8332800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
19	chr4:8332000-8333400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr4:8332000-8333600	Bivalent Enhancer	Fetal Stomach	stomach
21	chr4:8332200-8333000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr4:8332200-8333200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr4:8332200-8333400	Enhancers	Right Atrium	heart
24	chr4:8332200-8333600	Enhancers	Brain Cingulate Gyrus	brain

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