Variant report

Variant	rs557291357
Chromosome Location	chr1:168578852-168578853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168406270..168408708-chr1:168577956..168579929,2	MCF-7	breast:
2	chr1:168578094..168580109-chr1:168583246..168584781,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014626	chr1:168441288-168642731	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535196	chr1:168441288-168642731	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1011821	chr1:168441488-168642592	Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv535197	chr1:168441488-168642592	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1008852	chr1:168449940-168643905	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv535198	chr1:168449940-168643905	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv1007846	chr1:168449940-168687265	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	nsv831836	chr1:168538779-168716956	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv3443	chr1:168577582-168622305	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168569200-168582600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:168569600-168582400	Weak transcription	Fetal Intestine Small	intestine
3	chr1:168573200-168582200	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:168577800-168579600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr1:168577800-168579600	Enhancers	Fetal Muscle Leg	muscle
6	chr1:168578000-168579000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:168578000-168579200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:168578000-168579200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr1:168578000-168579600	Enhancers	Colon Smooth Muscle	Colon
10	chr1:168578000-168579600	Enhancers	Spleen	Spleen
11	chr1:168578200-168579000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:168578200-168579200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr1:168578200-168582200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr1:168578400-168579000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr1:168578400-168579000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr1:168578400-168579000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:168578400-168579000	Enhancers	Fetal Kidney	kidney
18	chr1:168578400-168579000	Bivalent Enhancer	Fetal Stomach	stomach
19	chr1:168578400-168579000	Enhancers	Right Atrium	heart
20	chr1:168578400-168579200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:168578400-168579200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:168578400-168579200	Enhancers	Esophagus	oesophagus
23	chr1:168578400-168579200	Enhancers	Fetal Heart	heart
24	chr1:168578400-168579200	Enhancers	Placenta	Placenta
25	chr1:168578400-168579200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr1:168578400-168579200	Enhancers	NH-A	brain
27	chr1:168578400-168579400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr1:168578600-168579000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr1:168578600-168579000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
30	chr1:168578600-168579000	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr1:168578600-168579000	Enhancers	Left Ventricle	heart
32	chr1:168578600-168579000	Active TSS	HSMMtube	muscle
33	chr1:168578600-168579200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
34	chr1:168578600-168579200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr1:168578600-168579200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr1:168578600-168579200	Enhancers	Brain Germinal Matrix	brain
37	chr1:168578600-168579600	Enhancers	Fetal Intestine Large	intestine
38	chr1:168578600-168579800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr1:168578600-168582200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr1:168578800-168579000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr1:168578800-168579000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr1:168578800-168579000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
43	chr1:168578800-168579000	Flanking Active TSS	Fetal Muscle Trunk	muscle
44	chr1:168578800-168579000	Enhancers	Stomach Smooth Muscle	stomach
45	chr1:168578800-168579200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr1:168578800-168579200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr1:168578800-168579200	Enhancers	Fetal Brain Male	brain
48	chr1:168578800-168579200	Enhancers	HMEC	breast
49	chr1:168578800-168579200	Flanking Active TSS	HSMM	muscle
50	chr1:168578800-168579600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links