Variant report

Variant	rs557309733
Chromosome Location	chr2:110268855-110268856
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:110064468..110066338-chr2:110266545..110269505,2	MCF-7	breast:
2	chr2:110267783..110269712-chr2:110370838..110373129,2	MCF-7	breast:
3	chr2:109898486..109901006-chr2:110267538..110269530,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186522	Chromatin interaction
ENSG00000198142	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874777	chr2:109825516-110693317	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv874779	chr2:110030964-110270250	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv874780	chr2:110078080-110432886	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv3332462	chr2:110268770-110273157	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:110256200-110270800	Weak transcription	Esophagus	oesophagus
2	chr2:110256200-110270800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr2:110256200-110271400	Weak transcription	Ovary	ovary
4	chr2:110257800-110287800	Weak transcription	Gastric	stomach
5	chr2:110258200-110271200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr2:110261600-110271200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr2:110262800-110270400	Weak transcription	Right Ventricle	heart
8	chr2:110263800-110271000	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:110265600-110270800	Weak transcription	Fetal Kidney	kidney
10	chr2:110267600-110269000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr2:110267600-110269200	Enhancers	Liver	Liver
12	chr2:110267600-110269200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr2:110267600-110269200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr2:110267600-110269400	Enhancers	Fetal Muscle Leg	muscle
15	chr2:110267800-110287600	Weak transcription	Right Atrium	heart
16	chr2:110268000-110270800	Enhancers	GM12878-XiMat	blood
17	chr2:110268200-110269400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr2:110268200-110271000	Weak transcription	Lung	lung
19	chr2:110268200-110271000	Weak transcription	NHLF	lung
20	chr2:110268400-110269000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr2:110268400-110269000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr2:110268400-110270800	Weak transcription	Spleen	Spleen
23	chr2:110268400-110271200	Weak transcription	Adipose Nuclei	Adipose
24	chr2:110268800-110269000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr2:110268800-110269200	Enhancers	HSMM	muscle

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