Variant report

Variant	rs557311534
Chromosome Location	chr10:98355516-98355517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98345341..98350021-chr10:98351580..98356203,7	MCF-7	breast:
2	chr10:98345273..98348471-chr10:98351958..98358343,11	MCF-7	breast:
3	chr10:98349885..98352079-chr10:98354867..98358726,5	MCF-7	breast:
4	chr10:98344232..98346275-chr10:98354019..98356301,2	K562	blood:
5	chr10:98347309..98348851-chr10:98354166..98356679,2	K562	blood:
6	chr10:98354342..98356014-chr10:98357344..98358952,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000077147	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv895909	chr10:98354924-98382165	Weak transcription Bivalent Enhancer Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98347400-98358800	Weak transcription	Pancreas	Pancrea
2	chr10:98347800-98365800	Weak transcription	Ovary	ovary
3	chr10:98348000-98373600	Weak transcription	Left Ventricle	heart
4	chr10:98348200-98356200	Weak transcription	Adipose Nuclei	Adipose
5	chr10:98348200-98357800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr10:98348200-98359000	Weak transcription	Brain Substantia Nigra	brain
7	chr10:98349600-98355600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:98349800-98366400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:98349800-98367800	Weak transcription	Small Intestine	intestine
10	chr10:98350800-98395600	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr10:98351600-98363400	Weak transcription	Brain Hippocampus Middle	brain
12	chr10:98352400-98357200	Strong transcription	GM12878-XiMat	blood
13	chr10:98352400-98378600	Strong transcription	Liver	Liver
14	chr10:98352400-98399400	Strong transcription	Primary B cells from peripheral blood	blood
15	chr10:98352600-98369400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:98352600-98403000	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr10:98353000-98388400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:98353000-98403000	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr10:98353600-98362800	Strong transcription	Primary hematopoietic stem cells	blood
20	chr10:98353800-98355800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:98354200-98360800	Enhancers	Fetal Intestine Large	intestine
22	chr10:98354400-98357000	Enhancers	Fetal Intestine Small	intestine
23	chr10:98354600-98357400	Strong transcription	Spleen	Spleen
24	chr10:98354600-98360800	Strong transcription	Primary B cells from cord blood	blood
25	chr10:98354600-98388600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr10:98354800-98357400	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr10:98354800-98370600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr10:98355200-98355800	Enhancers	K562	blood
29	chr10:98355200-98356000	Genic enhancers	Placenta	Placenta
30	chr10:98355200-98356800	Enhancers	HSMMtube	muscle
31	chr10:98355200-98357600	Enhancers	HepG2	liver
32	chr10:98355200-98360800	Enhancers	Stomach Mucosa	stomach
33	chr10:98355400-98355600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr10:98355400-98356200	Enhancers	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links