Variant report

Variant	rs55731737
Chromosome Location	chr16:31017683-31017684
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:31014981..31017878-chr16:31019821..31021502,2	MCF-7	breast:
2	chr16:31017556..31020249-chr16:31190322..31192799,3	K562	blood:
3	chr16:31007063..31009126-chr16:31016617..31018445,2	MCF-7	breast:
4	chr16:31017113..31020249-chr16:31190318..31192799,3	K562	blood:
5	chr16:31016193..31017724-chr16:31190060..31191679,2	MCF-7	breast:
6	chr16:31012830..31015179-chr16:31017421..31020382,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000099365	Chromatin interaction
ENSG00000089280	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12929007	0.83[AFR][1000 genomes]
rs2054214	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs55908605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56193946	0.91[AFR][1000 genomes]
rs6565214	0.83[EUR][1000 genomes]
rs72799363	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72799368	0.91[AFR][1000 genomes]
rs72800841	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72800842	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72800845	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72800846	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72800849	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72800854	0.86[EUR][1000 genomes]
rs72800858	0.84[EUR][1000 genomes]
rs9788865	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv1064134	chr16:30640293-31087327	Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	238 gene(s)	inside rSNPs	diseases
4	nsv905729	chr16:30642867-31247924	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	387 gene(s)	inside rSNPs	diseases
5	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
6	nsv833191	chr16:30864242-31048051	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	115 gene(s)	inside rSNPs	diseases
7	nsv905734	chr16:30877544-31191482	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
8	nsv905735	chr16:30890538-31247924	Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	264 gene(s)	inside rSNPs	diseases
9	nsv457483	chr16:30903679-31191482	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
10	nsv571820	chr16:30903679-31191482	Enhancers Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
11	esv1797877	chr16:30948643-31188432	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
12	nsv833193	chr16:30960796-31133604	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
13	nsv916994	chr16:30971725-31078117	Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31009000-31020400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr16:31009200-31020400	Weak transcription	Brain Angular Gyrus	brain
3	chr16:31009200-31034400	Weak transcription	Right Atrium	heart
4	chr16:31009400-31020600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr16:31009800-31021000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr16:31010200-31020800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr16:31011200-31018600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr16:31011200-31019800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr16:31012600-31020400	Weak transcription	Brain Germinal Matrix	brain
10	chr16:31013200-31018800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr16:31013800-31021000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr16:31014200-31019200	Weak transcription	HMEC	breast
13	chr16:31014200-31019600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr16:31014400-31018600	Weak transcription	NH-A	brain
15	chr16:31014400-31019200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr16:31014600-31019000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr16:31015400-31020600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr16:31015800-31020600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr16:31016800-31021000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr16:31017000-31017800	Flanking Bivalent TSS/Enh	HepG2	liver
21	chr16:31017000-31017800	Enhancers	K562	blood
22	chr16:31017000-31018000	Enhancers	Osteobl	bone
23	chr16:31017000-31018600	Strong transcription	Fetal Brain Female	brain
24	chr16:31017000-31021000	Enhancers	NHLF	lung
25	chr16:31017200-31017800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr16:31017200-31018000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr16:31017200-31018000	Enhancers	Fetal Brain Male	brain
28	chr16:31017200-31018200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr16:31017400-31018000	Enhancers	A549	lung
30	chr16:31017400-31018200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr16:31017400-31018400	Strong transcription	Brain Inferior Temporal Lobe	brain
32	chr16:31017600-31017800	Bivalent Enhancer	Fetal Muscle Leg	muscle
33	chr16:31017600-31017800	Bivalent Enhancer	Fetal Stomach	stomach
34	chr16:31017600-31018000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr16:31017600-31018200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr16:31017600-31018600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr16:31017600-31019800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr16:31017600-31020000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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