Variant report

Variant	rs557319091
Chromosome Location	chr6:144384569-144384570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144384139..144386162-chr6:144415974..144418368,2	MCF-7	breast:
2	chr6:144382541..144385412-chr6:144408158..144411278,3	K562	blood:
3	chr6:144382193..144387951-chr6:144413760..144419366,13	K562	blood:
4	chr6:144384404..144388265-chr6:144412934..144418087,11	K562	blood:
5	chr6:143882307..143884065-chr6:144383379..144386197,2	K562	blood:
6	chr6:144383030..144384886-chr6:144536136..144538729,2	K562	blood:

Variant related genes	Relation type
ENSG00000169976	Chromatin interaction
ENSG00000235740	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3358461	chr6:144384284-144386832	Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144375800-144384600	Weak transcription	Gastric	stomach
2	chr6:144383600-144387000	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr6:144383800-144384600	Flanking Active TSS	GM12878-XiMat	blood
4	chr6:144383800-144385000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr6:144383800-144385000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:144383800-144385000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:144383800-144385200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr6:144384000-144384600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:144384000-144384600	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr6:144384000-144384800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
11	chr6:144384000-144384800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
12	chr6:144384000-144384800	Flanking Active TSS	Thymus	Thymus
13	chr6:144384000-144384800	Flanking Active TSS	K562	blood
14	chr6:144384000-144385000	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr6:144384200-144384600	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:144384200-144384600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
17	chr6:144384200-144384600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
18	chr6:144384200-144384600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:144384200-144384600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:144384200-144384600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
21	chr6:144384200-144384600	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
22	chr6:144384200-144384600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
23	chr6:144384200-144384600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:144384200-144384600	Flanking Active TSS	Colonic Mucosa	Colon
25	chr6:144384200-144384600	Bivalent Enhancer	Fetal Heart	heart
26	chr6:144384200-144384600	Bivalent Enhancer	Fetal Kidney	kidney
27	chr6:144384200-144384600	Enhancers	Psoas Muscle	Psoas
28	chr6:144384200-144384600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
29	chr6:144384200-144384600	Bivalent Enhancer	Stomach Mucosa	stomach
30	chr6:144384200-144384600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
31	chr6:144384200-144384600	Enhancers	Spleen	Spleen
32	chr6:144384200-144384600	Flanking Bivalent TSS/Enh	A549	lung
33	chr6:144384200-144384800	Flanking Active TSS	Primary B cells from peripheral blood	blood
34	chr6:144384200-144384800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
35	chr6:144384200-144384800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
36	chr6:144384200-144385000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
37	chr6:144384200-144385000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
38	chr6:144384200-144385000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
39	chr6:144384200-144385000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
40	chr6:144384200-144385000	Flanking Active TSS	Brain Hippocampus Middle	brain
41	chr6:144384200-144385000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
42	chr6:144384200-144385000	Flanking Active TSS	Duodenum Mucosa	Duodenum
43	chr6:144384200-144385000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
44	chr6:144384200-144385200	Flanking Active TSS	Primary B cells from cord blood	blood
45	chr6:144384200-144385200	Flanking Active TSS	Primary T cells from cord blood	blood
46	chr6:144384200-144385200	Flanking Active TSS	Adipose Nuclei	Adipose
47	chr6:144384200-144386000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
48	chr6:144384200-144386000	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr6:144384200-144386200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
50	chr6:144384200-144386200	Active TSS	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links