The 2.0 version of rSNPBase

Variant report

Variant rs55733883
Chromosome Location chr5:127703296-127703297
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:50 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:127672000-127746000 Weak transcription NHDF-Ad bronchial
2 chr5:127673800-127706400 Weak transcription Breast Myoepithelial Primary Cells Breast
3 chr5:127675600-127742200 Weak transcription Fetal Intestine Small intestine
4 chr5:127677800-127711400 Weak transcription Primary neutrophils fromperipheralblood blood
5 chr5:127679200-127704200 Weak transcription Fetal Intestine Large intestine
6 chr5:127679200-127731200 Weak transcription Right Ventricle heart
7 chr5:127679800-127704400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr5:127681400-127704400 Weak transcription Ovary ovary
9 chr5:127681400-127706600 Weak transcription H1 Cell Line embryonic stem cell
10 chr5:127681600-127704200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
11 chr5:127681600-127714400 Weak transcription HUVEC blood vessel
12 chr5:127685400-127725000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr5:127685600-127704200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
14 chr5:127685800-127712400 Weak transcription HUES6 Cell Line embryonic stem cell
15 chr5:127686000-127738400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
16 chr5:127686000-127742000 Weak transcription A549 lung
17 chr5:127686600-127704800 Weak transcription NH-A brain
18 chr5:127686800-127704400 Weak transcription Left Ventricle heart
19 chr5:127687600-127704400 Weak transcription Fetal Muscle Trunk muscle
20 chr5:127690200-127724800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr5:127691000-127704200 Weak transcription Fetal Muscle Leg muscle
22 chr5:127691200-127703600 Weak transcription Muscle Satellite Cultured Cells --
23 chr5:127691200-127704200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr5:127693000-127703800 Weak transcription NHEK skin
25 chr5:127693000-127704200 Weak transcription Cortex derived primary cultured neurospheres brain
26 chr5:127693400-127714600 Weak transcription iPS-20b Cell Line embryonic stem cell
27 chr5:127695200-127737800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr5:127695800-127714000 Weak transcription Fetal Kidney kidney
29 chr5:127696000-127716000 Strong transcription Placenta Placenta
30 chr5:127696400-127703800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
31 chr5:127696400-127715000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr5:127696800-127738200 Weak transcription Fetal Lung lung
33 chr5:127697000-127712200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
34 chr5:127697600-127703600 Weak transcription Fetal Heart heart
35 chr5:127697600-127703800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
36 chr5:127699000-127704400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr5:127699200-127704200 Weak transcription Fetal Stomach stomach
38 chr5:127699800-127703600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
39 chr5:127700600-127719600 Weak transcription iPS-18 Cell Line embryonic stem cell
40 chr5:127701800-127716000 Strong transcription Monocytes-CD14+_RO01746 blood
41 chr5:127702000-127706400 Strong transcription HMEC breast
42 chr5:127702200-127706400 Strong transcription HUES64 Cell Line embryonic stem cell
43 chr5:127702400-127705400 Strong transcription Primary monocytes fromperipheralblood blood
44 chr5:127702400-127705800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr5:127702400-127706600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr5:127702400-127706800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr5:127702600-127704800 Strong transcription Placenta Amnion Placenta Amnion
48 chr5:127702600-127706600 Strong transcription Fetal Adrenal Gland Adrenal Gland
49 chr5:127702600-127714400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
50 chr5:127703000-127710600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015