Variant report

Variant	rs557339799
Chromosome Location	chr3:140771006-140771007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140766170..140768825-chr3:140770762..140772841,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432488	chr3:140752302-140790302	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3342822	chr3:140769087-140772135	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv591889	chr3:140769896-140778138	Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140769400-140771200	Active TSS	H9 Cell Line	embryonic stem cell
2	chr3:140769400-140771200	Active TSS	Fetal Brain Female	brain
3	chr3:140769400-140771400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
4	chr3:140769400-140771600	Bivalent Enhancer	Spleen	Spleen
5	chr3:140769400-140771800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:140769400-140772200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:140769400-140772400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:140769400-140772600	Active TSS	Fetal Kidney	kidney
9	chr3:140769600-140771200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:140769600-140771200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
11	chr3:140769600-140771200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:140769600-140771200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:140769600-140771400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:140769600-140771400	Bivalent/Poised TSS	A549	lung
15	chr3:140769600-140771600	Active TSS	Pancreas	Pancrea
16	chr3:140769600-140771800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:140769600-140772000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
18	chr3:140769600-140772000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
19	chr3:140769600-140772000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:140769600-140772000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:140769600-140772000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
22	chr3:140769600-140772000	Active TSS	Left Ventricle	heart
23	chr3:140769600-140772000	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
24	chr3:140769600-140772200	Active TSS	Right Atrium	heart
25	chr3:140769800-140771800	Active TSS	Aorta	Aorta
26	chr3:140769800-140772000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr3:140769800-140772000	Bivalent/Poised TSS	Brain Angular Gyrus	brain
28	chr3:140769800-140772000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
29	chr3:140769800-140772600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr3:140770000-140771200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
31	chr3:140770000-140771200	Active TSS	HSMMtube	muscle
32	chr3:140770000-140772000	Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr3:140770000-140772000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:140770000-140772400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr3:140770200-140771400	Bivalent Enhancer	HMEC	breast
36	chr3:140770200-140772000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr3:140770400-140771200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
38	chr3:140770400-140771400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
39	chr3:140770400-140771600	Flanking Bivalent TSS/Enh	Thymus	Thymus
40	chr3:140770400-140771800	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
41	chr3:140770400-140771800	Flanking Bivalent TSS/Enh	Placenta	Placenta
42	chr3:140770400-140772000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
43	chr3:140770600-140771200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr3:140770600-140771200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr3:140770600-140771200	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
46	chr3:140770600-140771400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr3:140770600-140771400	Bivalent/Poised TSS	Lung	lung
48	chr3:140770600-140771600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
49	chr3:140770600-140771600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
50	chr3:140770600-140771800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood

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