Variant report

Variant	rs557350294
Chromosome Location	chr11:73308791-73308792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73307696..73311155-chr11:73356118..73358808,4	MCF-7	breast:
2	chr11:73289699..73292318-chr11:73308150..73310462,2	K562	blood:
3	chr11:73308527..73310864-chr11:73370877..73373752,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231726	Chromatin interaction
ENSG00000021300	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv20896	chr11:73306779-73309297	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	esv3384593	chr11:73307854-73310302	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73307400-73310200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:73307600-73308800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:73307800-73308800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
4	chr11:73307800-73308800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
5	chr11:73307800-73308800	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr11:73307800-73310400	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr11:73307800-73310400	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr11:73308000-73308800	Flanking Active TSS	Primary T cells from cord blood	blood
9	chr11:73308000-73308800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:73308000-73308800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
11	chr11:73308000-73309000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
12	chr11:73308000-73310200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:73308000-73310400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:73308200-73308800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
15	chr11:73308200-73308800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
16	chr11:73308200-73308800	Flanking Active TSS	Primary hematopoietic stem cells	blood
17	chr11:73308200-73308800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
18	chr11:73308200-73308800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr11:73308200-73309000	Flanking Active TSS	Primary B cells from cord blood	blood
20	chr11:73308200-73309800	Active TSS	Fetal Brain Female	brain
21	chr11:73308200-73310200	Active TSS	H9 Cell Line	embryonic stem cell
22	chr11:73308200-73310200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr11:73308200-73310200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:73308200-73310400	Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr11:73308400-73308800	Flanking Active TSS	Primary B cells from peripheral blood	blood
26	chr11:73308400-73308800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
27	chr11:73308400-73308800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
28	chr11:73308400-73308800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:73308400-73308800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:73308400-73308800	Flanking Active TSS	Placenta	Placenta
31	chr11:73308400-73308800	Flanking Active TSS	Placenta Amnion	Placenta Amnion
32	chr11:73308400-73309800	Active TSS	HUES64 Cell Line	embryonic stem cell
33	chr11:73308400-73309800	Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr11:73308400-73310000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr11:73308400-73310000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:73308400-73310000	Active TSS	iPS-18 Cell Line	embryonic stem cell
37	chr11:73308400-73310000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:73308400-73310000	Active TSS	Aorta	Aorta
39	chr11:73308400-73310000	Active TSS	Small Intestine	intestine
40	chr11:73308400-73310000	Bivalent/Poised TSS	HepG2	liver
41	chr11:73308400-73310200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr11:73308400-73310200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr11:73308400-73310200	Active TSS	Cortex derived primary cultured neurospheres	brain
44	chr11:73308400-73310200	Active TSS	Brain Germinal Matrix	brain
45	chr11:73308400-73310200	Active TSS	Brain Inferior Temporal Lobe	brain
46	chr11:73308400-73310200	Active TSS	NHDF-Ad	bronchial
47	chr11:73308400-73310200	Active TSS	NHLF	lung
48	chr11:73308400-73310400	Active TSS	ES-I3 Cell Line	embryonic stem cell
49	chr11:73308400-73310400	Active TSS	HUES6 Cell Line	embryonic stem cell
50	chr11:73308400-73310400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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