Variant report

Variant	rs557353003
Chromosome Location	chr13:95925163-95925164
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:95873940..95876786-chr13:95925021..95926772,2	K562	blood:
2	chr13:95923828..95925504-chr13:95926180..95928122,2	K562	blood:
3	chr13:95924370..95928427-chr13:95951382..95954630,5	K562	blood:

Variant related genes	Relation type
ENSG00000125257	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1043019	chr13:95924585-96152616	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95897000-95927400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr13:95908000-95926600	Weak transcription	Gastric	stomach
3	chr13:95910200-95927400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr13:95913600-95932800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr13:95917000-95931400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr13:95919000-95925600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr13:95919000-95930000	Weak transcription	Esophagus	oesophagus
8	chr13:95919800-95928000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr13:95920200-95928800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr13:95920200-95952800	Weak transcription	Aorta	Aorta
11	chr13:95920400-95927400	Weak transcription	Hela-S3	cervix
12	chr13:95920600-95928200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr13:95920800-95925600	Weak transcription	Placenta	Placenta
14	chr13:95921200-95925600	Weak transcription	Lung	lung
15	chr13:95921400-95926200	Weak transcription	Right Atrium	heart
16	chr13:95921600-95927600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr13:95922200-95926200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr13:95922400-95926200	Weak transcription	Small Intestine	intestine
19	chr13:95922400-95927600	Weak transcription	Brain Anterior Caudate	brain
20	chr13:95922400-95927800	Weak transcription	NHEK	skin
21	chr13:95922800-95926400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr13:95922800-95928200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr13:95923000-95925400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr13:95923000-95925400	Weak transcription	Psoas Muscle	Psoas
25	chr13:95923000-95925600	Weak transcription	GM12878-XiMat	blood
26	chr13:95923000-95926400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr13:95923800-95925600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr13:95923800-95925600	Weak transcription	Pancreas	Pancrea
29	chr13:95923800-95926000	Weak transcription	Ovary	ovary
30	chr13:95923800-95926200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr13:95923800-95941200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr13:95924000-95925400	Weak transcription	Brain Hippocampus Middle	brain
33	chr13:95924000-95925600	Weak transcription	Fetal Intestine Small	intestine
34	chr13:95924000-95926600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr13:95924000-95927400	Weak transcription	NHDF-Ad	bronchial
36	chr13:95924200-95925200	Enhancers	K562	blood
37	chr13:95924200-95925400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr13:95924200-95925800	Weak transcription	Fetal Stomach	stomach
39	chr13:95924200-95927400	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr13:95924200-95927600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr13:95924200-95927600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr13:95924200-95928000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr13:95924200-95930800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr13:95924200-95932800	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr13:95924400-95925400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr13:95924400-95925400	Weak transcription	Colon Smooth Muscle	Colon
47	chr13:95924400-95925600	Weak transcription	Stomach Mucosa	stomach
48	chr13:95924400-95925600	Weak transcription	Stomach Smooth Muscle	stomach
49	chr13:95924400-95925800	Weak transcription	Fetal Lung	lung
50	chr13:95924400-95926200	Weak transcription	Fetal Intestine Large	intestine

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