Variant report

Variant	rs55735854
Chromosome Location	chr11:24275385-24275386
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11027753	0.87[ASN][1000 genomes]
rs11027786	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11027791	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11027795	0.81[ASN][1000 genomes]
rs12269768	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12270316	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12273122	0.89[ASN][1000 genomes]
rs12274916	0.91[ASN][1000 genomes]
rs12275366	0.91[ASN][1000 genomes]
rs12294118	0.91[ASN][1000 genomes]
rs12788438	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1443047	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16912302	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16912350	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16912383	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16912405	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16912409	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1806939	0.94[EUR][1000 genomes]
rs28439532	0.92[ASN][1000 genomes]
rs28666941	0.92[ASN][1000 genomes]
rs56300401	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59509035	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60149726	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7107738	0.84[ASN][1000 genomes]
rs7110982	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7119181	0.94[ASN][1000 genomes]
rs7128158	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7942689	0.89[ASN][1000 genomes]
rs894530	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553775	chr11:24001975-24323572	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv897077	chr11:24091682-24308924	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1055026	chr11:24151133-24737122	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1037744	chr11:24174588-24737122	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv467753	chr11:24190138-24335921	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv553783	chr11:24190138-24335921	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv897083	chr11:24210635-24346093	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv897084	chr11:24232604-24308924	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv897085	chr11:24233998-24305935	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv467754	chr11:24246904-24290818	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv553784	chr11:24246904-24290818	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv897086	chr11:24261507-24356464	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24274800-24275600	Enhancers	HUVEC	blood vessel
2	chr11:24275200-24275400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

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