Variant report

Variant	rs55736228
Chromosome Location	chr1:174759977-174759978
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174758880..174761152-chr1:174967654..174970317,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000116161	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55687955	0.81[AFR][1000 genomes]
rs57753240	1.00[AFR][1000 genomes]
rs60002580	1.00[AFR][1000 genomes]
rs74126859	0.85[AFR][1000 genomes]
rs74126864	0.85[AFR][1000 genomes]
rs74126867	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
4	nsv548198	chr1:174731596-174800872	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174747000-174768400	Weak transcription	Primary B cells from cord blood	blood
2	chr1:174752400-174760800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr1:174752400-174764000	Weak transcription	Fetal Intestine Small	intestine
4	chr1:174752400-174764200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:174756800-174760000	Enhancers	HSMMtube	muscle
6	chr1:174758200-174768400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:174758800-174760000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:174758800-174761000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:174758800-174761000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr1:174758800-174768000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:174758800-174768200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr1:174759000-174760400	Weak transcription	K562	blood
13	chr1:174759200-174760200	Weak transcription	HSMM	muscle
14	chr1:174759200-174760800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr1:174759200-174761000	Weak transcription	NHLF	lung
16	chr1:174759200-174764200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:174759200-174764200	Weak transcription	HMEC	breast
18	chr1:174759200-174764600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr1:174759400-174760000	Enhancers	GM12878-XiMat	blood
20	chr1:174759400-174760800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:174759400-174764000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr1:174759400-174764000	Weak transcription	NHEK	skin
23	chr1:174759400-174768000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr1:174759400-174768400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr1:174759400-174768400	Weak transcription	Osteobl	bone
26	chr1:174759600-174760800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr1:174759600-174760800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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