Variant report

Variant	rs55736297
Chromosome Location	chr19:41094283-41094284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr19:41094121-41094289	MCF-7	breast:	n/a	n/a
2	MAX	chr19:41093686-41094978	A549	lung:	n/a	n/a
3	TCF12	chr19:41093771-41094814	A549	lung:	n/a	n/a
4	E2F6	chr19:41094179-41094842	A549	lung:	n/a	n/a
5	CTCF	chr19:41094116-41094292	MCF-7	breast:	n/a	n/a
6	MAX	chr19:41094218-41094895	HCT-116	colon:	n/a	n/a
7	POLR2A	chr19:41094228-41094520	K562	blood:	n/a	n/a
8	CEBPB	chr19:41094145-41094334	Hela-S3	cervix:	n/a	n/a
9	MAX	chr19:41093834-41094919	HCT-116	colon:	n/a	n/a
10	MAX	chr19:41094194-41094857	A549	lung:	n/a	n/a
11	POLR2A	chr19:41093987-41095369	GM12878	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:41093158..41095920-chr19:41115359..41117293,2	K562	blood:
2	chr19:41089607..41091803-chr19:41093435..41095307,2	MCF-7	breast:
3	chr19:41081905..41084190-chr19:41093984..41096140,3	MCF-7	breast:
4	chr19:41081729..41084463-chr19:41093067..41095436,3	MCF-7	breast:
5	chr19:41089392..41091268-chr19:41092459..41096170,3	K562	blood:
6	chr19:41093850..41097927-chr19:41099715..41103880,5	K562	blood:

No data

Variant related genes	Relation type
LTBP4	TF binding region
SHKBP1	TF binding region
ENSG00000090006	Chromatin interaction
ENSG00000160410	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7253575	0.81[EUR][1000 genomes]
rs73035918	0.81[EUR][1000 genomes]
rs8106578	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830682	chr19:40880127-41270055	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
2	nsv911714	chr19:41006426-41165252	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv911715	chr19:41014922-41141434	Bivalent Enhancer Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv1057634	chr19:41019512-41174259	Enhancers Active TSS Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv911716	chr19:41023511-41109456	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv911717	chr19:41023511-41141434	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
7	nsv911719	chr19:41033109-41147087	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
8	nsv911720	chr19:41033109-41156940	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
9	nsv911721	chr19:41040334-41124931	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
10	nsv911722	chr19:41040334-41176403	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
11	nsv911723	chr19:41075990-41195279	Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
12	nsv869561	chr19:41077513-41139834	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
13	nsv1064699	chr19:41086506-41174259	Genic enhancers Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
14	nsv911724	chr19:41089505-41165252	Bivalent/Poised TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
15	nsv911725	chr19:41090190-41114065	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
16	nsv911726	chr19:41090190-41141434	Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41083600-41095400	Weak transcription	Fetal Kidney	kidney
2	chr19:41083600-41100400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr19:41083600-41101000	Weak transcription	HSMMtube	muscle
4	chr19:41084000-41095400	Strong transcription	Fetal Intestine Small	intestine
5	chr19:41084000-41097600	Strong transcription	Fetal Stomach	stomach
6	chr19:41084200-41099800	Weak transcription	Fetal Brain Male	brain
7	chr19:41084400-41100000	Weak transcription	Stomach Mucosa	stomach
8	chr19:41084600-41095200	Strong transcription	Fetal Muscle Leg	muscle
9	chr19:41084600-41097600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr19:41084600-41100400	Weak transcription	NHDF-Ad	bronchial
11	chr19:41084600-41102600	Weak transcription	Right Atrium	heart
12	chr19:41084800-41096600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr19:41084800-41097200	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr19:41084800-41097600	Strong transcription	Thymus	Thymus
15	chr19:41085400-41094800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr19:41085400-41097200	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr19:41085800-41095200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr19:41085800-41095200	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr19:41086000-41094600	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr19:41086000-41094800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr19:41086000-41095200	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr19:41086000-41095200	Strong transcription	Stomach Smooth Muscle	stomach
23	chr19:41086000-41097200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr19:41086000-41097800	Strong transcription	Primary T cells from cord blood	blood
25	chr19:41086400-41100400	Weak transcription	K562	blood
26	chr19:41086600-41097400	Strong transcription	Primary B cells from peripheral blood	blood
27	chr19:41086800-41097400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr19:41086800-41097400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr19:41086800-41099000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr19:41086800-41100000	Weak transcription	Fetal Brain Female	brain
31	chr19:41086800-41100600	Weak transcription	Brain Angular Gyrus	brain
32	chr19:41087000-41097000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr19:41087000-41097200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr19:41087200-41096800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr19:41087200-41100400	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr19:41087600-41102600	Weak transcription	Small Intestine	intestine
37	chr19:41087800-41095600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr19:41087800-41098200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr19:41087800-41100000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr19:41088400-41095800	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr19:41088400-41100200	Weak transcription	Brain Substantia Nigra	brain
42	chr19:41088600-41100200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr19:41089200-41100400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr19:41089400-41098200	Weak transcription	Brain Germinal Matrix	brain
45	chr19:41089600-41095800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr19:41089800-41095200	Strong transcription	Duodenum Mucosa	Duodenum
47	chr19:41090400-41096800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr19:41090600-41099600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr19:41090800-41100000	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr19:41091400-41097200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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