Variant report

Variant	rs55736618
Chromosome Location	chr12:119013885-119013886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11068999	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11069002	1.00[ASN][1000 genomes]
rs12367551	1.00[ASN][1000 genomes]
rs1356950	1.00[ASN][1000 genomes]
rs1402341	1.00[ASN][1000 genomes]
rs1568440	1.00[ASN][1000 genomes]
rs1818730	1.00[ASN][1000 genomes]
rs1829566	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1879402	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1879404	1.00[ASN][1000 genomes]
rs1879407	1.00[ASN][1000 genomes]
rs1879408	1.00[ASN][1000 genomes]
rs1915347	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1970874	1.00[ASN][1000 genomes]
rs1976824	1.00[ASN][1000 genomes]
rs2090774	1.00[ASN][1000 genomes]
rs2203992	1.00[ASN][1000 genomes]
rs2249341	1.00[ASN][1000 genomes]
rs2393420	1.00[ASN][1000 genomes]
rs2682754	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2682757	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682759	1.00[ASN][1000 genomes]
rs2682762	1.00[ASN][1000 genomes]
rs2682764	1.00[ASN][1000 genomes]
rs2682765	1.00[ASN][1000 genomes]
rs2682766	1.00[ASN][1000 genomes]
rs2682768	1.00[ASN][1000 genomes]
rs2682770	1.00[ASN][1000 genomes]
rs2682771	1.00[ASN][1000 genomes]
rs2730570	1.00[ASN][1000 genomes]
rs2730571	1.00[ASN][1000 genomes]
rs2730572	1.00[ASN][1000 genomes]
rs2730573	1.00[ASN][1000 genomes]
rs2730575	1.00[ASN][1000 genomes]
rs2730577	1.00[ASN][1000 genomes]
rs2730578	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2730579	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2730580	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2730583	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2730584	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2730585	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2730586	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2730587	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2730588	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930978	chr12:118866332-119450600	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1038601	chr12:118958107-119023980	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv523621	chr12:118958608-119019143	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv560391	chr12:118958608-119019143	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1038024	chr12:118965736-119014468	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv541614	chr12:118965736-119014468	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1043906	chr12:118991884-119087146	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv1793941	chr12:119006818-119022988	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3325012	chr12:119012269-119015267	Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
10	esv3409623	chr12:119012269-119015367	Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
11	esv3443251	chr12:119012269-119015667	Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119013600-119014000	ZNF genes & repeats	Fetal Kidney	kidney
2	chr12:119013600-119014200	Active TSS	NHDF-Ad	bronchial

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