Variant report

Variant	rs55738330
Chromosome Location	chr21:37828129-37828130
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:37826859..37829532-chr21:37843976..37845773,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57340296	1.00[AMR][1000 genomes]
rs59744590	1.00[AMR][1000 genomes]
rs61745291	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902523	0.81[AFR][1000 genomes]
rs73902524	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv33286	chr21:37827016-37861556	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37804000-37831600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr21:37804000-37831600	Weak transcription	HSMMtube	muscle
3	chr21:37810400-37833400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr21:37810600-37829200	Weak transcription	HSMM	muscle
5	chr21:37810600-37829400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr21:37819400-37831400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr21:37824800-37828200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr21:37824800-37836800	Weak transcription	Right Atrium	heart
9	chr21:37825000-37829400	Weak transcription	Adipose Nuclei	Adipose
10	chr21:37825800-37828600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr21:37825800-37833600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr21:37826000-37828200	Genic enhancers	HUVEC	blood vessel
13	chr21:37826000-37828400	Enhancers	Pancreas	Pancrea
14	chr21:37827000-37831800	Weak transcription	Spleen	Spleen
15	chr21:37827200-37834000	Weak transcription	A549	lung
16	chr21:37827200-37837200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr21:37827400-37828800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr21:37827400-37829000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr21:37827400-37829000	Weak transcription	NH-A	brain
20	chr21:37827400-37831400	Weak transcription	Fetal Muscle Leg	muscle
21	chr21:37827400-37834000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr21:37827400-37836400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr21:37827400-37836800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr21:37827600-37831800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr21:37827600-37831800	Weak transcription	Fetal Lung	lung
26	chr21:37827600-37832000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr21:37827600-37834200	Weak transcription	Fetal Kidney	kidney
28	chr21:37827600-37834600	Weak transcription	Brain Anterior Caudate	brain
29	chr21:37827800-37828800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr21:37827800-37828800	Weak transcription	Osteobl	bone
31	chr21:37827800-37831800	Weak transcription	Lung	lung
32	chr21:37827800-37834400	Weak transcription	Ovary	ovary
33	chr21:37828000-37831400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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