Variant report

Variant	rs55738749
Chromosome Location	chr2:184478662-184478663
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10206407	1.00[ASN][1000 genomes]
rs72890271	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890273	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892310	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892319	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9989867	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012672	chr2:184363204-184571778	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2757843	chr2:184368473-184558908	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759105	chr2:184368473-184558908	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv428729	chr2:184368473-184558908	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184470000-184478800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:184475800-184479600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:184478200-184479600	Enhancers	Fetal Heart	heart
4	chr2:184478400-184479000	Enhancers	Left Ventricle	heart
5	chr2:184478400-184479000	Enhancers	Psoas Muscle	Psoas
6	chr2:184478400-184479000	Enhancers	Right Atrium	heart
7	chr2:184478400-184479400	Enhancers	Stomach Smooth Muscle	stomach
8	chr2:184478400-184480000	Enhancers	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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