The 2.0 version of rSNPBase

Variant report

Variant rs55738876
Chromosome Location chr1:172572415-172572416
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172540200-172581000 Weak transcription Colonic Mucosa Colon
2 chr1:172557400-172581200 Weak transcription Fetal Heart heart
3 chr1:172557600-172574600 Weak transcription Stomach Mucosa stomach
4 chr1:172559000-172583400 Weak transcription ES-WA7 Cell Line embryonic stem cell
5 chr1:172559800-172573400 Weak transcription Fetal Brain Male brain
6 chr1:172560000-172578400 Weak transcription HSMMtube muscle
7 chr1:172560000-172580600 Weak transcription Small Intestine intestine
8 chr1:172560000-172581200 Weak transcription Psoas Muscle Psoas
9 chr1:172560000-172582400 Weak transcription Brain Substantia Nigra brain
10 chr1:172560200-172574200 Weak transcription HUVEC blood vessel
11 chr1:172560200-172581800 Weak transcription Hela-S3 cervix
12 chr1:172560400-172572800 Weak transcription Brain Inferior Temporal Lobe brain
13 chr1:172563600-172574400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr1:172563600-172574800 Strong transcription Primary B cells from peripheral blood blood
15 chr1:172563800-172581200 Strong transcription Primary B cells from cord blood blood
16 chr1:172563800-172582000 Strong transcription Monocytes-CD14+_RO01746 blood
17 chr1:172564400-172581000 Strong transcription Primary neutrophils fromperipheralblood blood
18 chr1:172564400-172582000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
19 chr1:172564600-172579200 Weak transcription Fetal Kidney kidney
20 chr1:172565200-172573400 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
21 chr1:172565400-172573000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr1:172565400-172574000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
23 chr1:172566000-172573600 Weak transcription Brain Anterior Caudate brain
24 chr1:172566000-172574800 Strong transcription Primary T helper cells PMA-I stimulated --
25 chr1:172566000-172581200 Strong transcription Primary monocytes fromperipheralblood blood
26 chr1:172566200-172575000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr1:172566400-172573200 Weak transcription Brain Hippocampus Middle brain
28 chr1:172566400-172573600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
29 chr1:172566400-172573800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
30 chr1:172566400-172575000 Strong transcription Breast Myoepithelial Primary Cells Breast
31 chr1:172566400-172575000 Strong transcription Primary T helper cells fromperipheralblood blood
32 chr1:172566400-172576800 Strong transcription Primary T cells fromperipheralblood blood
33 chr1:172566600-172573200 Weak transcription Pancreatic Islets Pancreatic Islet
34 chr1:172566600-172574000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr1:172566600-172575000 Strong transcription Primary T regulatory cells fromperipheralblood blood
36 chr1:172566600-172575000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr1:172566600-172581000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr1:172566600-172581000 Weak transcription H9 Cell Line embryonic stem cell
39 chr1:172566600-172581200 Weak transcription Fetal Stomach stomach
40 chr1:172566600-172581800 Weak transcription Esophagus oesophagus
41 chr1:172566600-172582200 Weak transcription Fetal Intestine Small intestine
42 chr1:172566600-172595800 Weak transcription Primary T helper naive cells from peripheral blood blood
43 chr1:172566800-172573400 Strong transcription HUES6 Cell Line embryonic stem cell
44 chr1:172566800-172579200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
45 chr1:172567000-172575000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
46 chr1:172567000-172578200 Weak transcription Cortex derived primary cultured neurospheres brain
47 chr1:172567000-172579000 Weak transcription Sigmoid Colon Sigmoid Colon
48 chr1:172567000-172580600 Weak transcription Right Ventricle heart
49 chr1:172567000-172580800 Weak transcription Ovary ovary
50 chr1:172567200-172579000 Weak transcription ES-I3 Cell Line embryonic stem cell

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Last update: Aug 31, 2015