Variant report

Variant	rs55739788
Chromosome Location	chr10:1651182-1651183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:1643971..1645583-chr10:1650285..1653262,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11250662	0.85[EUR][1000 genomes]
rs17293991	0.87[ASN][1000 genomes]
rs17294005	0.87[ASN][1000 genomes]
rs17294019	0.87[ASN][1000 genomes]
rs55939733	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74108955	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530117	chr10:945438-1729634	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv817532	chr10:964660-1885945	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1041498	chr10:1117200-1760190	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1052682	chr10:1162925-1675641	Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1046041	chr10:1195214-2189155	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1037054	chr10:1232041-1865296	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv540413	chr10:1232041-1865296	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv549769	chr10:1244020-1764966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv549786	chr10:1293100-1904598	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv894736	chr10:1513349-1672408	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1054555	chr10:1558145-1965145	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv894737	chr10:1560338-1692796	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1052401	chr10:1582012-1964762	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv540417	chr10:1582012-1964762	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv894738	chr10:1613026-1791836	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	nsv1047729	chr10:1640337-1675641	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv894739	chr10:1643368-1669110	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv894740	chr10:1646899-1675548	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1649800-1651800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:1650200-1651600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:1650200-1652000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:1650400-1651800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:1650400-1652600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:1650600-1651200	Bivalent Enhancer	Fetal Lung	lung
7	chr10:1650600-1651400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:1650600-1651600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
9	chr10:1650600-1652200	Bivalent Enhancer	Fetal Brain Male	brain
10	chr10:1650800-1651200	Active TSS	Brain Anterior Caudate	brain
11	chr10:1650800-1651400	Bivalent/Poised TSS	Primary B cells from cord blood	blood
12	chr10:1651000-1651200	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr10:1651000-1651200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr10:1651000-1651200	Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr10:1651000-1651200	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
16	chr10:1651000-1651200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:1651000-1651200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
18	chr10:1651000-1651200	Flanking Bivalent TSS/Enh	Brain Angular Gyrus	brain
19	chr10:1651000-1651400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr10:1651000-1651400	Active TSS	H9 Cell Line	embryonic stem cell
21	chr10:1651000-1651400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr10:1651000-1651400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
23	chr10:1651000-1651400	Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr10:1651000-1651400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:1651000-1651400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:1651000-1651400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr10:1651000-1651400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:1651000-1651400	Active TSS	Brain Cingulate Gyrus	brain
29	chr10:1651000-1651400	Flanking Active TSS	Brain Hippocampus Middle	brain
30	chr10:1651000-1651400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
31	chr10:1651000-1651600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
32	chr10:1651000-1651600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
33	chr10:1651000-1651600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
34	chr10:1651000-1651800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr10:1651000-1651800	Flanking Active TSS	Brain Germinal Matrix	brain
36	chr10:1651000-1651800	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
37	chr10:1651000-1651800	Flanking Active TSS	Brain Substantia Nigra	brain
38	chr10:1651000-1651800	Flanking Active TSS	Fetal Brain Female	brain
39	chr10:1651000-1652000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain

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