Variant report

Variant	rs55743607
Chromosome Location	chr15:45248787-45248788
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYA	chr15:45248613-45248975	K562	blood:	n/a	chr15:45248851-45248864 chr15:45248822-45248832 chr15:45248851-45248866 chr15:45248851-45248865 chr15:45248851-45248866 chr15:45248853-45248863
2	GATA1	chr15:45248599-45248865	PBDE	blood:	n/a	chr15:45248779-45248786 chr15:45248702-45248718 chr15:45248780-45248797 chr15:45248752-45248759 chr15:45248779-45248788 chr15:45248778-45248788
3	YY1	chr15:45248755-45248958	K562	blood:	n/a	chr15:45248910-45248922
4	E2F6	chr15:45248619-45249124	H1-hESC	embryonic stem cell:	n/a	n/a
5	NFYB	chr15:45248647-45249153	K562	blood:	n/a	chr15:45248851-45248864 chr15:45248822-45248832 chr15:45248851-45248866 chr15:45248851-45248865 chr15:45248851-45248866 chr15:45248853-45248863
6	EP300	chr15:45248553-45248874	K562	blood:	n/a	n/a
7	CTCF	chr15:45248720-45248870	GM12869	blood:	n/a	n/a
8	YY1	chr15:45248748-45249017	H1-hESC	embryonic stem cell:	n/a	chr15:45248910-45248922
9	CBX3	chr15:45248617-45248975	K562	blood:	n/a	n/a
10	TAL1	chr15:45248607-45248994	K562	blood:	n/a	chr15:45248779-45248797

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:45248744-45248794	GM12891	blood:	n/a
2	chr15:45248744-45248794	ovcar-3	ovarian:	n/a
3	chr15:45248744-45248794	SAEC	small airway:	n/a
4	chr15:45248744-45248794	AG09309	skin:	n/a
5	chr15:45248744-45248794	U87	brain:	n/a
6	chr15:45248744-45248794	HRE	kidney:	n/a
7	chr15:45248744-45248794	IMR90	lung:	fetal
8	chr15:45248744-45248794	HIPEpiC	eye:	n/a
9	chr15:45248744-45248794	AoSMC	blood vessel:	n/a
10	chr15:45248744-45248794	HEEpiC	esophagus:	n/a
11	chr15:45248744-45248794	HEK293	kidney:	embryo
12	chr15:45248744-45248794	HUVEC	blood vessel:	n/a
13	chr15:45248744-45248794	RPTEC	kidney:	n/a
14	chr15:45248744-45248794	PFSK-1	brain:	n/a
15	chr15:45248744-45248794	CMK	blood:	n/a
16	chr15:45248744-45248794	K562	blood:	n/a
17	chr15:45248744-45248794	LNCaP	prostate:	n/a
18	chr15:45248744-45248794	NH-A	brain:	n/a
19	chr15:45248744-45248794	AG04450	lung:	fetal
20	chr15:45248744-45248794	GM12892	blood:	n/a
21	chr15:45248744-45248794	HCM	heart:	n/a
22	chr15:45248744-45248794	MCF10A-Er-Src	breast:	n/a
23	chr15:45248744-45248794	BJ	skin:	n/a
24	chr15:45248744-45248794	NHDF-neo	bronchial:	n/a
25	chr15:45248744-45248794	Caco-2	colon:	n/a
26	chr15:45248744-45248794	HepG2	liver:	n/a
27	chr15:45248744-45248794	AG04449	skin:	fetal
28	chr15:45248744-45248794	NT2-D1	testis:	n/a
29	chr15:45248744-45248794	GM12878	blood:	n/a
30	chr15:45248744-45248794	ECC-1	luminal epithelium:	n/a
31	chr15:45248744-45248794	Hela-S3	cervix:	n/a
32	chr15:45248744-45248794	HCF	heart:	n/a
33	chr15:45248744-45248794	Hepatocyte	liver:	n/a
34	chr15:45248744-45248794	SKMC	muscle:	n/a
35	chr15:45248744-45248794	PrEC	prostate:	n/a
36	chr15:45248744-45248794	HCT-116	colon:	n/a
37	chr15:45248744-45248794	ProgFib	skin:	n/a
38	chr15:45248744-45248794	MCF-7	breast:	n/a
39	chr15:45248744-45248794	AG09319	gingival:	n/a
40	chr15:45248744-45248794	HCPEpiC	choroid plexus:	n/a
41	chr15:45248744-45248794	SK-N-MC	brain:	n/a
42	chr15:45248744-45248794	PANC-1	pancreas:	n/a
43	chr15:45248744-45248794	HMEC	breast:	n/a
44	chr15:45248744-45248794	NHBE	bronchial:	n/a
45	chr15:45248744-45248794	GM19239	blood:	n/a
46	chr15:45248744-45248794	GM06990	blood:	n/a
47	chr15:45248744-45248794	BE2_C	brain:	n/a
48	chr15:45248744-45248794	HRPEpiC	eye:	n/a
49	chr15:45248744-45248794	HPAEpiC	pulmonary alveolar:	n/a
50	chr15:45248744-45248794	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
C15orf43	TF binding region
C15orf43	CpG island

Extended variants
information (count: 26 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758380	chr15:44968868-45422842	Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
2	esv2760029	chr15:44968868-45422842	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
3	nsv916374	chr15:45058112-45769052	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
4	nsv1048668	chr15:45094019-45284278	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1048867	chr15:45100852-45289756	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	esv2757599	chr15:45100852-45383620	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv1036204	chr15:45105374-45284278	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1047353	chr15:45105374-45289756	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv1040940	chr15:45105374-45300844	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	esv2753133	chr15:45105876-45268182	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	esv34494	chr15:45105876-45268208	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	nsv1041613	chr15:45111367-45284278	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
13	nsv1053041	chr15:45117399-45289756	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
14	nsv1040140	chr15:45121635-45289756	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
15	nsv904182	chr15:45146708-45267670	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
16	nsv904183	chr15:45146708-45279246	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
17	nsv1050674	chr15:45152371-45250017	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
18	nsv1037190	chr15:45152371-45259624	Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
19	nsv1053492	chr15:45152371-45275226	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
20	nsv1054418	chr15:45152371-45289756	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
21	nsv1037941	chr15:45152371-45296101	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
22	nsv1048317	chr15:45152371-45326205	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
23	nsv1038598	chr15:45203386-45266683	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
24	nsv569304	chr15:45225516-45264045	Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
25	nsv569310	chr15:45234946-45259425	Enhancers Flanking Active TSS Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
26	nsv904184	chr15:45248787-45314764	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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