Variant report

Variant	rs557448002
Chromosome Location	chr14:65959114-65959115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65949225..65952104-chr14:65958180..65961178,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65931400-65966200	Weak transcription	Aorta	Aorta
2	chr14:65937400-65961600	Weak transcription	Fetal Intestine Large	intestine
3	chr14:65938400-65963400	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr14:65939000-65969400	Weak transcription	Dnd41	blood
5	chr14:65940600-65959400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr14:65945200-65980000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr14:65949600-65970200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr14:65950000-65965000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr14:65950000-65966000	Weak transcription	Psoas Muscle	Psoas
10	chr14:65950000-65969400	Weak transcription	NH-A	brain
11	chr14:65950000-65973400	Weak transcription	Gastric	stomach
12	chr14:65952200-65960000	Enhancers	Brain Substantia Nigra	brain
13	chr14:65952600-65963200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr14:65953600-65959800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr14:65953800-65970600	Weak transcription	Stomach Mucosa	stomach
16	chr14:65954800-65959400	Weak transcription	Left Ventricle	heart
17	chr14:65955200-65960600	Weak transcription	Brain Germinal Matrix	brain
18	chr14:65955400-65960000	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr14:65956600-65963000	Weak transcription	Primary T cells from cord blood	blood
20	chr14:65957400-65959800	Enhancers	Brain Anterior Caudate	brain
21	chr14:65957400-65960000	Strong transcription	Primary B cells from cord blood	blood
22	chr14:65957600-65964200	ZNF genes & repeats	GM12878-XiMat	blood
23	chr14:65957600-65967800	Weak transcription	Small Intestine	intestine
24	chr14:65958000-65959600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr14:65958000-65960200	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr14:65958200-65959600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr14:65958200-65960200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr14:65958800-65959200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr14:65958800-65959400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
30	chr14:65958800-65960000	Enhancers	Brain Cingulate Gyrus	brain
31	chr14:65959000-65959200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr14:65959000-65959400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr14:65959000-65959400	Enhancers	Pancreas	Pancrea
34	chr14:65959000-65959800	Enhancers	Brain Hippocampus Middle	brain

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