Variant report

Variant	rs557452701
Chromosome Location	chr12:105069025-105069026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105067366..105069246-chr12:105069344..105071422,3	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1050695	chr12:105000981-105125161	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv541589	chr12:105000981-105125161	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv20343	chr12:105068621-105069284	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105065400-105076000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr12:105065600-105075400	Weak transcription	Primary T cells from cord blood	blood
3	chr12:105066000-105071200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr12:105066000-105072800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:105066000-105073000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr12:105066000-105073600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr12:105066000-105073800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr12:105066000-105074000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr12:105066000-105074000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr12:105066200-105070600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr12:105066200-105070600	Weak transcription	Fetal Brain Male	brain
12	chr12:105066200-105071000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr12:105066200-105073200	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr12:105066200-105073600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr12:105066200-105074200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr12:105066200-105074200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr12:105066400-105074200	Weak transcription	Thymus	Thymus
18	chr12:105066600-105069400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr12:105066600-105069800	Weak transcription	Primary B cells from cord blood	blood
20	chr12:105066600-105070400	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr12:105066600-105070600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr12:105066600-105070800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr12:105066600-105070800	Weak transcription	Esophagus	oesophagus
24	chr12:105066600-105073400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr12:105066600-105073400	Weak transcription	Spleen	Spleen
26	chr12:105066600-105077800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr12:105066800-105069400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr12:105066800-105069600	Weak transcription	Lung	lung
29	chr12:105066800-105070400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr12:105066800-105071200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr12:105066800-105073400	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr12:105067000-105070600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr12:105067000-105070800	Weak transcription	NHEK	skin
34	chr12:105067200-105071000	Weak transcription	Brain Angular Gyrus	brain
35	chr12:105067400-105070800	Weak transcription	Brain Hippocampus Middle	brain
36	chr12:105067600-105070800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr12:105067600-105071000	Weak transcription	HMEC	breast
38	chr12:105067600-105076400	Weak transcription	Brain Anterior Caudate	brain
39	chr12:105067800-105069400	Strong transcription	Dnd41	blood
40	chr12:105067800-105069800	Weak transcription	Placenta	Placenta
41	chr12:105067800-105070600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr12:105067800-105070600	Weak transcription	Gastric	stomach
43	chr12:105067800-105070600	Weak transcription	Right Atrium	heart
44	chr12:105067800-105071600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr12:105067800-105073600	Weak transcription	Fetal Thymus	thymus
46	chr12:105067800-105076200	Weak transcription	Right Ventricle	heart
47	chr12:105067800-105076600	Weak transcription	Left Ventricle	heart
48	chr12:105067800-105078600	Weak transcription	Brain Substantia Nigra	brain
49	chr12:105067800-105096000	Weak transcription	K562	blood
50	chr12:105068000-105069200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links