Variant report

Variant	rs557455757
Chromosome Location	chr3:52377320-52377321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834695	chr3:52199701-52400577	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	98 gene(s)	inside rSNPs	diseases
2	nsv876789	chr3:52247110-52575831	Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	nsv984542	chr3:52285682-52516115	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
4	nsv834696	chr3:52317478-52479537	Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	45 gene(s)	inside rSNPs	diseases
5	esv3428292	chr3:52376212-52382310	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52330400-52378600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:52344600-52378600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:52352000-52379800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:52352200-52379000	Weak transcription	Colonic Mucosa	Colon
5	chr3:52352200-52382000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr3:52352200-52384600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr3:52352600-52379400	Weak transcription	Pancreas	Pancrea
8	chr3:52353400-52377400	Weak transcription	Fetal Muscle Leg	muscle
9	chr3:52354400-52379800	Weak transcription	Esophagus	oesophagus
10	chr3:52354800-52384000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:52358400-52380400	Weak transcription	Ovary	ovary
12	chr3:52362400-52378200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr3:52362800-52378600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:52364200-52383000	Weak transcription	Fetal Lung	lung
15	chr3:52364400-52379400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr3:52364800-52394400	Weak transcription	HSMMtube	muscle
17	chr3:52366400-52378400	Weak transcription	Brain Anterior Caudate	brain
18	chr3:52366400-52383000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:52366600-52377800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr3:52366600-52377800	Weak transcription	Spleen	Spleen
21	chr3:52366600-52378400	Weak transcription	Gastric	stomach
22	chr3:52366600-52379400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr3:52366600-52386600	Weak transcription	Aorta	Aorta
24	chr3:52366800-52383000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr3:52367200-52378600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr3:52367200-52379600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr3:52367600-52384400	Weak transcription	Fetal Kidney	kidney
28	chr3:52368400-52378400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr3:52368400-52378400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr3:52368400-52378600	Weak transcription	Primary B cells from peripheral blood	blood
31	chr3:52368400-52383000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr3:52368800-52377400	Weak transcription	Adipose Nuclei	Adipose
33	chr3:52368800-52377600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr3:52368800-52378200	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr3:52368800-52378200	Weak transcription	Fetal Muscle Trunk	muscle
36	chr3:52368800-52378400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr3:52368800-52380200	Weak transcription	Left Ventricle	heart
38	chr3:52368800-52380400	Weak transcription	Placenta	Placenta
39	chr3:52368800-52380400	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr3:52370600-52379600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr3:52370800-52377400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr3:52371000-52377400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr3:52372000-52379200	Weak transcription	Primary B cells from cord blood	blood
44	chr3:52372000-52379600	Weak transcription	NHLF	lung
45	chr3:52372000-52380400	Weak transcription	Primary hematopoietic stem cells	blood
46	chr3:52372200-52379600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr3:52372400-52378600	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr3:52372600-52379600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr3:52372600-52379600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr3:52373800-52396000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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