Variant report

Variant	rs557456483
Chromosome Location	chr4:174088925-174088926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:174088782-174094458	PANC-1	pancreas:	n/a	n/a
2	EP300	chr4:174088907-174089476	GM12878	blood:	n/a	chr4:174089301-174089315
3	POLR2A	chr4:174088863-174091516	GM18526	blood:	n/a	n/a
4	TEAD4	chr4:174088863-174090008	K562	blood:	n/a	n/a
5	SMC3	chr4:174088897-174089823	GM12878	blood:	n/a	n/a
6	MYC	chr4:174088892-174090213	K562	blood:	n/a	chr4:174089336-174089346
7	ZNF384	chr4:174088741-174089538	GM12878	blood:	n/a	n/a
8	MAX	chr4:174088919-174090283	NB4	blood:	n/a	chr4:174089336-174089346
9	MYC	chr4:174088917-174091408	K562	blood:	n/a	chr4:174089336-174089346 chr4:174091392-174091402
10	MAX	chr4:174088888-174090403	A549	lung:	n/a	chr4:174089336-174089346
11	MXI1	chr4:174088877-174091784	IMR90	lung:	n/a	chr4:174089336-174089345
12	TBP	chr4:174088925-174089527	Hela-S3	cervix:	n/a	n/a
13	PML	chr4:174088913-174090209	K562	blood:	n/a	n/a
14	POLR2A	chr4:174088894-174090882	HCT-116	colon:	n/a	n/a
15	ZNF143	chr4:174088915-174088937	K562	blood:	n/a	n/a
16	POLR2A	chr4:174088885-174090373	HL-60	blood:	n/a	n/a
17	MTA3	chr4:174088838-174089849	GM12878	blood:	n/a	n/a
18	SIN3AK20	chr4:174088917-174090109	MCF-7	breast:	n/a	n/a
19	MAX	chr4:174088910-174090370	ECC-1	luminal epithelium:	n/a	chr4:174089336-174089346
20	CEBPB	chr4:174088871-174089512	GM12878	blood:	n/a	n/a
21	ZNF384	chr4:174088654-174090008	K562	blood:	n/a	n/a
22	POLR2A	chr4:174088864-174092064	GM12891	blood:	n/a	n/a
23	MYC	chr4:174088893-174090165	K562	blood:	n/a	chr4:174089336-174089346
24	MYC	chr4:174088827-174090057	A549	lung:	n/a	chr4:174089336-174089346
25	MYC	chr4:174088919-174091410	K562	blood:	n/a	chr4:174089336-174089346 chr4:174091392-174091402
26	PML	chr4:174088875-174090326	GM12878	blood:	n/a	n/a
27	MAX	chr4:174088889-174091620	HCT-116	colon:	n/a	chr4:174089336-174089346 chr4:174091392-174091402
28	MAX	chr4:174088845-174090959	A549	lung:	n/a	chr4:174089336-174089346
29	MAX	chr4:174088907-174090272	H1-hESC	embryonic stem cell:	n/a	chr4:174089336-174089346
30	MXI1	chr4:174088815-174092075	SK-N-SH	brain:	n/a	chr4:174089336-174089345
31	CBX3	chr4:174088919-174090047	K562	blood:	n/a	n/a
32	POLR2A	chr4:174088919-174090213	GM12878	blood:	n/a	n/a
33	MYC	chr4:174088906-174091604	NB4	blood:	n/a	chr4:174089336-174089346 chr4:174091392-174091402
34	MTA3	chr4:174088791-174091825	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:174087023..174089565-chr4:174159233..174161373,2	MCF-7	breast:
2	chr4:174080088..174082274-chr4:174088293..174089862,2	MCF-7	breast:
3	chr4:174087322..174089631-chr4:174102847..174104512,2	K562	blood:
4	chr4:174088355..174091772-chr4:174254077..174258410,8	K562	blood:
5	chr4:174072381..174074317-chr4:174086673..174089260,2	K562	blood:
6	chr1:65719996..65720543-chr4:174088718..174089605,2	Hela-S3	cervix:
7	chr4:174088713..174091772-chr4:174254390..174258410,4	K562	blood:
8	chr4:174084331..174086204-chr4:174086936..174089803,3	MCF-7	breast:

Variant related genes	Relation type
GALNT7	TF binding region
ENSG00000164104	Chromatin interaction
ENSG00000116675	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3357841	chr4:174088902-174091750	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174066800-174089000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:174066800-174089000	Weak transcription	HSMM	muscle
3	chr4:174072200-174089000	Weak transcription	Fetal Stomach	stomach
4	chr4:174073600-174089000	Weak transcription	Pancreas	Pancrea
5	chr4:174073600-174089200	Weak transcription	Aorta	Aorta
6	chr4:174073800-174089000	Weak transcription	NHLF	lung
7	chr4:174077800-174089000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr4:174080000-174089000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr4:174081000-174089000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:174081200-174089000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:174083400-174089000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr4:174083600-174089000	Weak transcription	Brain Substantia Nigra	brain
13	chr4:174083800-174089000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr4:174084200-174089000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:174084400-174089000	Weak transcription	Brain Hippocampus Middle	brain
16	chr4:174084800-174089000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr4:174085200-174089000	Weak transcription	Adipose Nuclei	Adipose
18	chr4:174085200-174089000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr4:174085400-174089000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr4:174085600-174089000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr4:174086200-174089000	Weak transcription	Esophagus	oesophagus
22	chr4:174086600-174089000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr4:174087200-174089000	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr4:174087600-174089000	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr4:174087600-174089000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr4:174088200-174089000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr4:174088200-174089000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr4:174088200-174089000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr4:174088200-174089000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr4:174088400-174089000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr4:174088400-174089000	Enhancers	Brain Cingulate Gyrus	brain
32	chr4:174088400-174089000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr4:174088400-174089000	Enhancers	Fetal Muscle Leg	muscle
34	chr4:174088400-174091400	Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr4:174088400-174091600	Active TSS	HUES48 Cell Line	embryonic stem cell
36	chr4:174088400-174091600	Active TSS	A549	lung
37	chr4:174088400-174092200	Active TSS	H9 Cell Line	embryonic stem cell
38	chr4:174088600-174089000	Weak transcription	Stomach Mucosa	stomach
39	chr4:174088600-174089400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
40	chr4:174088600-174089800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr4:174088600-174091400	Active TSS	Rectal Mucosa Donor 31	rectum
42	chr4:174088600-174092000	Active TSS	Rectal Mucosa Donor 29	rectum
43	chr4:174088800-174089000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr4:174088800-174089000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
45	chr4:174088800-174089000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr4:174088800-174089000	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr4:174088800-174089000	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr4:174088800-174089000	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr4:174088800-174089000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr4:174088800-174089000	Enhancers	Primary T helper cells PMA-I stimulated	--

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