Variant report

Variant	rs55746200
Chromosome Location	chr3:69586006-69586007
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17006070	1.00[AMR][1000 genomes]
rs17006073	1.00[AMR][1000 genomes]
rs17006111	1.00[AMR][1000 genomes]
rs55690669	1.00[AMR][1000 genomes]
rs73835877	1.00[AMR][1000 genomes]
rs73835900	1.00[AMR][1000 genomes]
rs73836165	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3426797	chr3:69433086-69777229	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69581400-69587400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:69582800-69587200	Weak transcription	Brain Anterior Caudate	brain
3	chr3:69582800-69587600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:69582800-69587600	Weak transcription	Fetal Brain Female	brain
5	chr3:69583000-69590000	Weak transcription	Brain Angular Gyrus	brain
6	chr3:69583200-69586400	Weak transcription	Fetal Brain Male	brain
7	chr3:69583200-69587200	Weak transcription	HMEC	breast
8	chr3:69583400-69586600	Weak transcription	Fetal Lung	lung
9	chr3:69583600-69586800	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:69585200-69586400	Weak transcription	NHEK	skin
11	chr3:69585200-69589800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr3:69585400-69588400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:69585400-69590000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr3:69585400-69590000	Weak transcription	Spleen	Spleen
15	chr3:69585600-69586800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:69585600-69587400	Weak transcription	Lung	lung
17	chr3:69585800-69586400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:69585800-69588000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:69585800-69590000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:69585800-69590000	Weak transcription	Right Atrium	heart
21	chr3:69586000-69589200	Enhancers	Brain Substantia Nigra	brain

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