Variant report
| Variant | rs55746803 |
|---|---|
| Chromosome Location | chr2:98968435-98968436 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:98966148..98968083-chr2:98968184..98969887,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10496326 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13418293 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2055592 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2134936 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55690937 | 0.86[AMR][1000 genomes] |
| rs55716887 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55773255 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55869498 | 0.86[AMR][1000 genomes] |
| rs56112202 | 0.86[AMR][1000 genomes] |
| rs56150536 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56289599 | 0.86[AMR][1000 genomes] |
| rs56859980 | 0.86[AMR][1000 genomes] |
| rs57502811 | 0.86[AMR][1000 genomes] |
| rs57738681 | 0.86[AMR][1000 genomes] |
| rs58799739 | 0.86[AMR][1000 genomes] |
| rs59040049 | 0.86[AMR][1000 genomes] |
| rs62156274 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs62156307 | 0.86[AMR][1000 genomes] |
| rs62156315 | 0.85[AMR][1000 genomes] |
| rs62156316 | 0.86[AMR][1000 genomes] |
| rs6732568 | 0.86[AMR][1000 genomes] |
| rs6732654 | 0.86[AMR][1000 genomes] |
| rs6734225 | 0.87[AMR][1000 genomes] |
| rs72819945 | 0.86[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv518056 | chr2:98586842-99156296 | Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1008645 | chr2:98915767-99010743 | Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1010466 | chr2:98938886-98998109 | Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1013617 | chr2:98943377-99004173 | Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv960976 | chr2:98967643-98973191 | Weak transcription Enhancers ZNF genes & repeats | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:98964800-98970000 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 2 | chr2:98965800-98972400 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
