Variant report

Variant	rs55748351
Chromosome Location	chr6:75649650-75649651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75649112..75649762-chr6:75913676..75914528,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58731341	1.00[AMR][1000 genomes]
rs73745749	1.00[AMR][1000 genomes]
rs73758990	1.00[AMR][1000 genomes]
rs73758992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75643000-75656800	Weak transcription	HSMMtube	muscle
2	chr6:75643800-75656800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:75647000-75657000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:75647200-75651800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:75647200-75652000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:75647400-75650200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:75647400-75651600	Weak transcription	NHDF-Ad	bronchial
8	chr6:75647400-75651800	Weak transcription	HSMM	muscle
9	chr6:75647800-75656800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:75647800-75657000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:75648000-75652000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:75648000-75656800	Weak transcription	NH-A	brain
13	chr6:75649000-75650600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:75649000-75651400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:75649200-75649800	Enhancers	Fetal Muscle Leg	muscle
16	chr6:75649200-75650400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:75649200-75650600	Enhancers	HMEC	breast
18	chr6:75649200-75650600	Enhancers	Osteobl	bone
19	chr6:75649600-75650000	Enhancers	NHLF	lung
20	chr6:75649600-75651600	Weak transcription	NHEK	skin

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