Variant report

Variant	rs557487729
Chromosome Location	chr11:104786619-104786620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv832255	chr11:104674918-104846961	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	esv2757474	chr11:104719593-104798545	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2759862	chr11:104719593-104798545	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv898355	chr11:104730322-104897843	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv1040784	chr11:104763797-104855878	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
10	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
11	esv3334824	chr11:104776753-104813836	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv898356	chr11:104779195-104838471	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
13	esv3385159	chr11:104786549-105051555	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
14	esv3356969	chr11:104786594-104803934	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104769200-104787800	Weak transcription	Fetal Lung	lung
2	chr11:104769400-104786800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr11:104769600-104786800	Weak transcription	Adipose Nuclei	Adipose
4	chr11:104769600-104788000	Weak transcription	Fetal Stomach	stomach
5	chr11:104776400-104787200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:104778400-104786800	Weak transcription	Aorta	Aorta
7	chr11:104778400-104788800	Weak transcription	Pancreas	Pancrea
8	chr11:104779000-104786800	Weak transcription	NHLF	lung
9	chr11:104779200-104788000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr11:104783400-104786800	Weak transcription	Dnd41	blood
11	chr11:104783800-104788000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr11:104784400-104787000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr11:104785200-104787200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr11:104785400-104786800	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr11:104785400-104787000	Enhancers	Psoas Muscle	Psoas
16	chr11:104785600-104786800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr11:104785600-104787000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr11:104785600-104788000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr11:104785800-104787200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:104786000-104786800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr11:104786000-104787000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:104786000-104788000	Enhancers	Primary B cells from peripheral blood	blood
23	chr11:104786400-104787000	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr11:104786600-104786800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:104786600-104786800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
26	chr11:104786600-104786800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:104786600-104786800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr11:104786600-104786800	Enhancers	Lung	lung
29	chr11:104786600-104786800	Enhancers	Right Atrium	heart
30	chr11:104786600-104786800	Enhancers	HUVEC	blood vessel
31	chr11:104786600-104787000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
32	chr11:104786600-104787000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
33	chr11:104786600-104787000	Enhancers	Fetal Muscle Leg	muscle
34	chr11:104786600-104787000	Enhancers	Left Ventricle	heart
35	chr11:104786600-104787000	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr11:104786600-104787000	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr11:104786600-104787000	Enhancers	Small Intestine	intestine
38	chr11:104786600-104787200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
39	chr11:104786600-104787200	Enhancers	Ovary	ovary
40	chr11:104786600-104787400	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr11:104786600-104788200	Enhancers	Primary T cells from cord blood	blood

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