Variant report

Variant	rs557492548
Chromosome Location	chr6:149409878-149409879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149406617..149408383-chr6:149409345..149411999,2	K562	blood:
2	chr6:149409350..149410995-chr6:149644588..149646898,2	K562	blood:
3	chr6:149402943..149406251-chr6:149407231..149409997,4	K562	blood:
4	chr6:149406617..149408839-chr6:149409602..149411999,2	K562	blood:
5	chr6:149407753..149410844-chr6:149747576..149751159,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv830842	chr6:149272321-149427340	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv520134	chr6:149409860-149410132	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149395000-149415000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:149399200-149415000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:149402200-149410600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:149402200-149414400	Weak transcription	Fetal Kidney	kidney
5	chr6:149402200-149414600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:149402200-149415000	Weak transcription	Esophagus	oesophagus
7	chr6:149402400-149416200	Weak transcription	Fetal Heart	heart
8	chr6:149405600-149411200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:149405600-149413000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr6:149405600-149413600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:149405800-149414000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr6:149406200-149413400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr6:149406200-149413600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr6:149406800-149410600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:149407000-149413200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:149407200-149412000	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr6:149407200-149412200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:149407200-149413200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:149407600-149411800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:149407800-149410800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:149407800-149411600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:149409000-149410000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:149409000-149410200	Enhancers	Placenta	Placenta
24	chr6:149409800-149413000	Weak transcription	Dnd41	blood
25	chr6:149409800-149415000	Weak transcription	Gastric	stomach

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