Variant report

Variant	rs557502788
Chromosome Location	chr10:25336690-25336691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25304583..25307026-chr10:25335686..25338076,2	MCF-7	breast:
2	chr10:25334592..25336921-chr10:25350299..25353033,2	K562	blood:

Variant related genes	Relation type
ENSG00000185875	Chromatin interaction
ENSG00000151023	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25335400-25337000	Enhancers	K562	blood
2	chr10:25335600-25337200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:25335600-25338000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr10:25336000-25336800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr10:25336000-25337800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:25336000-25337800	Enhancers	HMEC	breast
7	chr10:25336000-25338000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:25336000-25338000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:25336200-25337200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:25336200-25337400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr10:25336200-25337600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:25336200-25337600	Enhancers	Osteobl	bone
13	chr10:25336200-25337800	Enhancers	NHEK	skin
14	chr10:25336200-25338200	Enhancers	Fetal Intestine Small	intestine
15	chr10:25336400-25336800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:25336400-25336800	Enhancers	Ovary	ovary
17	chr10:25336400-25336800	Enhancers	NH-A	brain
18	chr10:25336400-25337000	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr10:25336400-25337200	Enhancers	Adipose Nuclei	Adipose
20	chr10:25336400-25337400	Weak transcription	Fetal Brain Female	brain
21	chr10:25336400-25337600	Enhancers	HSMM	muscle
22	chr10:25336400-25338200	Enhancers	Brain Anterior Caudate	brain
23	chr10:25336600-25337200	Enhancers	Primary hematopoietic stem cells	blood
24	chr10:25336600-25337200	Enhancers	Brain Hippocampus Middle	brain
25	chr10:25336600-25337400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:25336600-25338000	Enhancers	HSMMtube	muscle

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