Variant report

Variant	rs557518706
Chromosome Location	chr1:173607642-173607643
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415007	chr1:173606736-173611929	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173606800-173607800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
2	chr1:173606800-173608000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:173606800-173609600	Active TSS	H1 Cell Line	embryonic stem cell
4	chr1:173606800-173611400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr1:173607000-173607800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr1:173607000-173607800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
7	chr1:173607000-173607800	Enhancers	Right Atrium	heart
8	chr1:173607000-173609200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:173607200-173607800	Enhancers	Pancreas	Pancrea
10	chr1:173607400-173607800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:173607400-173608400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr1:173607400-173608600	Enhancers	K562	blood
13	chr1:173607400-173609200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:173607400-173624600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr1:173607600-173609000	Active TSS	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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