Variant report

Variant	rs55752091
Chromosome Location	chr8:121415203-121415204
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55727749	1.00[EUR][1000 genomes]
rs55777961	1.00[EUR][1000 genomes]
rs7812415	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1033386	chr8:121369943-121501239	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121396800-121416800	Weak transcription	Aorta	Aorta
2	chr8:121402000-121456400	Weak transcription	Small Intestine	intestine
3	chr8:121402200-121415600	Weak transcription	Esophagus	oesophagus
4	chr8:121402200-121416200	Weak transcription	Stomach Mucosa	stomach
5	chr8:121404000-121433400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr8:121404400-121421400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr8:121404400-121454400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr8:121404600-121456000	Weak transcription	Colonic Mucosa	Colon
9	chr8:121404800-121416600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr8:121405000-121456000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr8:121405600-121455600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr8:121407800-121417400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr8:121407800-121424600	Weak transcription	Brain Angular Gyrus	brain
14	chr8:121407800-121442800	Weak transcription	NHEK	skin
15	chr8:121408000-121416200	Weak transcription	HUVEC	blood vessel
16	chr8:121408200-121450400	Weak transcription	Psoas Muscle	Psoas
17	chr8:121408400-121415400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr8:121408400-121415600	Weak transcription	K562	blood
19	chr8:121408400-121416200	Weak transcription	Hela-S3	cervix
20	chr8:121408400-121442800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr8:121409400-121415600	Weak transcription	Pancreas	Pancrea
22	chr8:121409800-121446200	Weak transcription	Right Ventricle	heart
23	chr8:121410200-121456400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr8:121410200-121456600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr8:121410400-121416200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr8:121410400-121417200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr8:121410600-121415600	Weak transcription	Left Ventricle	heart
28	chr8:121410600-121415600	Weak transcription	Lung	lung
29	chr8:121410600-121416600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr8:121410600-121416800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr8:121410600-121423000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr8:121410600-121423000	Weak transcription	Thymus	Thymus
33	chr8:121410600-121456600	Weak transcription	Gastric	stomach
34	chr8:121410600-121456600	Weak transcription	Spleen	Spleen
35	chr8:121410800-121415800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr8:121410800-121416200	Weak transcription	Stomach Smooth Muscle	stomach
37	chr8:121411000-121416400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr8:121411000-121417000	Weak transcription	Placenta	Placenta
39	chr8:121411000-121418200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr8:121411000-121443600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr8:121411000-121456000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr8:121411200-121415600	Weak transcription	HepG2	liver
43	chr8:121411200-121416600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr8:121411400-121416400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr8:121411400-121417000	Weak transcription	Ovary	ovary
46	chr8:121412000-121415800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr8:121412400-121416000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr8:121412400-121416000	Weak transcription	Liver	Liver
49	chr8:121412400-121416200	Weak transcription	HSMM	muscle
50	chr8:121412400-121423000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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