Variant report

Variant	rs557523158
Chromosome Location	chr5:177521589-177521590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:177519806..177521961-chr5:177524247..177526841,2	K562	blood:
2	chr5:177503413..177514913-chr5:177516551..177522941,24	MCF-7	breast:
3	chr5:177516313..177518533-chr5:177518658..177522708,4	MCF-7	breast:
4	chr5:177518051..177521986-chr5:177526387..177530024,4	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030383	chr5:177310325-177571254	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv883186	chr5:177376317-177549491	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
4	nsv1021198	chr5:177386267-177611648	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv1021060	chr5:177386344-177539867	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv600391	chr5:177488281-177549491	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
8	nsv462567	chr5:177505021-177572927	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv471058	chr5:177505021-177572927	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
10	nsv600392	chr5:177505021-177572927	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv1019404	chr5:177507080-177859089	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	126 gene(s)	inside rSNPs	diseases
12	esv3373392	chr5:177520446-177526044	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177513600-177526400	Weak transcription	Gastric	stomach
2	chr5:177519600-177522000	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr5:177519600-177522200	Enhancers	Fetal Thymus	thymus
4	chr5:177519800-177521600	Enhancers	Primary T cells fromperipheralblood	blood
5	chr5:177519800-177522200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr5:177520200-177522000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr5:177520200-177522000	Enhancers	Thymus	Thymus
8	chr5:177520200-177522200	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr5:177521000-177521800	Enhancers	Primary B cells from cord blood	blood
10	chr5:177521000-177522000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr5:177521000-177522000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr5:177521000-177522000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr5:177521000-177522000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr5:177521000-177522000	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr5:177521000-177522200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr5:177521200-177522000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr5:177521200-177522000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr5:177521400-177521600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr5:177521400-177521600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr5:177521400-177521600	Flanking Active TSS	Primary T cells from cord blood	blood
21	chr5:177521400-177521800	Enhancers	Primary B cells from peripheral blood	blood
22	chr5:177521400-177521800	Enhancers	Primary hematopoietic stem cells	blood
23	chr5:177521400-177521800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr5:177521400-177521800	Enhancers	Fetal Muscle Trunk	muscle
25	chr5:177521400-177522000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links