Variant report

Variant	rs557525525
Chromosome Location	chr13:49536309-49536310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:49535149..49536967-chr13:49548289..49550226,2	K562	blood:
2	chr13:49535111..49537978-chr13:49544443..49546396,2	K562	blood:

Variant related genes	Relation type
ENSG00000102531	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:69 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1034	chr13:49526761-49572727	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv1846360	chr13:49529799-49536644	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1843197	chr13:49529799-49536705	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3506285	chr13:49531551-49538549	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv455882	chr13:49531551-49679157	Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv561593	chr13:49531551-49679157	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	esv3325002	chr13:49532151-49537699	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv2547809	chr13:49532571-49537005	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3428007	chr13:49532601-49537649	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3512527	chr13:49532891-49537105	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3512528	chr13:49532891-49537105	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv3506273	chr13:49532931-49536991	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv512315	chr13:49532940-49536678	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv1793841	chr13:49532972-49536464	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv1798692	chr13:49532972-49536464	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv511507	chr13:49532972-49540727	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv3506251	chr13:49532976-49537824	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv3506296	chr13:49533001-49536991	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv3506262	chr13:49533001-49537149	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv826635	chr13:49533069-49536855	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	esv989553	chr13:49533373-49536566	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	nsv826636	chr13:49533373-49536566	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	nsv821420	chr13:49533373-49536855	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
25	nsv498812	chr13:49533506-49536622	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	esv14444	chr13:49533529-49536855	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
27	esv1841525	chr13:49533568-49536319	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	nsv561596	chr13:49533568-49536319	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
29	esv1791875	chr13:49533568-49536464	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
30	esv1792581	chr13:49533568-49536464	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
31	esv1795673	chr13:49533568-49536464	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
32	esv1797612	chr13:49533568-49536464	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
33	esv1798844	chr13:49533568-49536464	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
34	esv1839557	chr13:49533568-49536464	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
35	esv1850606	chr13:49533568-49536464	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
36	nsv561597	chr13:49533568-49536464	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
37	esv1794172	chr13:49533568-49536644	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
38	esv1794836	chr13:49533568-49536644	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
39	esv1795094	chr13:49533568-49536644	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
40	esv1803262	chr13:49533568-49536644	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
41	esv1803843	chr13:49533568-49536644	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
42	esv1829195	chr13:49533568-49536644	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
43	esv1831176	chr13:49533568-49536644	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
44	esv1835107	chr13:49533568-49536644	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
45	esv1841281	chr13:49533568-49536644	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
46	esv1845853	chr13:49533568-49536644	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
47	esv1851771	chr13:49533568-49536644	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
48	nsv561598	chr13:49533568-49536644	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
49	esv1794111	chr13:49533568-49536705	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
50	esv1801194	chr13:49533568-49536705	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links