Variant report

Variant	rs55754542
Chromosome Location	chr15:83611537-83611538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83586586..83589404-chr15:83610320..83612935,3	MCF-7	breast:
2	chr15:83611228..83613735-chr15:83667947..83669649,2	MCF-7	breast:
3	chr15:83611455..83612030-chr15:83620705..83621230,2	MCF-7	breast:
4	chr15:83610269..83612055-chr15:83875374..83877470,2	MCF-7	breast:
5	chr15:83604502..83607500-chr15:83609162..83613049,3	K562	blood:
6	chr15:83610228..83612890-chr15:83652094..83656198,6	MCF-7	breast:
7	chr15:83254004..83256301-chr15:83611241..83613482,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166503	Chromatin interaction
ENSG00000169612	Chromatin interaction
ENSG00000103942	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2219889	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs58070122	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83586600-83619400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:83588800-83611600	Weak transcription	Right Atrium	heart
3	chr15:83606200-83611600	Weak transcription	A549	lung
4	chr15:83606600-83613200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr15:83606600-83618800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:83606600-83620000	Weak transcription	Right Ventricle	heart
7	chr15:83606800-83611600	Weak transcription	Left Ventricle	heart
8	chr15:83609000-83613800	Enhancers	Pancreas	Pancrea
9	chr15:83610200-83612600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:83610400-83612400	Enhancers	HMEC	breast
11	chr15:83610600-83612200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr15:83610600-83612200	Enhancers	Liver	Liver
13	chr15:83610600-83612200	Enhancers	NHEK	skin
14	chr15:83610600-83613800	Enhancers	Gastric	stomach
15	chr15:83610600-83614200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr15:83610800-83612400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:83611000-83612000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:83611000-83612000	Enhancers	Placenta	Placenta
19	chr15:83611000-83612200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr15:83611000-83612200	Enhancers	Lung	lung
21	chr15:83611200-83611600	Enhancers	NH-A	brain
22	chr15:83611200-83612000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:83611200-83612000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr15:83611200-83612000	Enhancers	Hela-S3	cervix
25	chr15:83611200-83612000	Enhancers	Osteobl	bone
26	chr15:83611200-83612200	Enhancers	HSMM	muscle
27	chr15:83611200-83614400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:83611400-83611800	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr15:83611400-83612200	Enhancers	HSMMtube	muscle
30	chr15:83611400-83612400	Weak transcription	Psoas Muscle	Psoas
31	chr15:83611400-83619800	Weak transcription	Esophagus	oesophagus

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