Variant report

Variant	rs55755203
Chromosome Location	chr6:150735599-150735600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1045009	1.00[AMR][1000 genomes]
rs56164919	1.00[AMR][1000 genomes]
rs57897960	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60767497	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61164757	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782619	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782621	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782624	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480175	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022455	chr6:150727247-150755933	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150731000-150739000	Weak transcription	Hela-S3	cervix
2	chr6:150731200-150740200	Weak transcription	Spleen	Spleen
3	chr6:150732000-150740000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:150732200-150739000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:150732800-150739000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:150733600-150738800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:150735000-150735600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:150735200-150739800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:150735400-150739800	Weak transcription	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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