Variant report

Variant	rs557553961
Chromosome Location	chr13:110425197-110425198
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110395852..110397862-chr13:110423883..110426288,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv826788	chr13:110381750-110469062	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv826789	chr13:110387268-110473524	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv826790	chr13:110395165-110463032	Weak transcription Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv826791	chr13:110397733-110462553	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv826792	chr13:110398678-110462209	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv1047427	chr13:110412864-110446417	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv826793	chr13:110423187-110448628	Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
8	nsv826794	chr13:110424916-110448628	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110397000-110428800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr13:110397200-110430400	Weak transcription	NHLF	lung
3	chr13:110401800-110430800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr13:110403200-110430600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr13:110406200-110429400	Weak transcription	Primary B cells from cord blood	blood
6	chr13:110408600-110430400	Weak transcription	Colonic Mucosa	Colon
7	chr13:110409000-110431200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr13:110409400-110429800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr13:110409400-110430200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr13:110413400-110430400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr13:110413600-110430800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr13:110414400-110428800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr13:110415000-110428800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr13:110416000-110430800	Weak transcription	Fetal Kidney	kidney
15	chr13:110417000-110432400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr13:110417200-110430400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr13:110417200-110431600	Weak transcription	Fetal Muscle Leg	muscle
18	chr13:110417400-110425600	Weak transcription	NH-A	brain
19	chr13:110417400-110429400	Weak transcription	Small Intestine	intestine
20	chr13:110417400-110430200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr13:110417600-110430400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr13:110417600-110430400	Weak transcription	Thymus	Thymus
23	chr13:110417600-110430600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr13:110417800-110428800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr13:110417800-110428800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr13:110417800-110429400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr13:110417800-110430200	Weak transcription	Fetal Thymus	thymus
28	chr13:110419200-110428000	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr13:110419600-110428600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr13:110419600-110429400	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr13:110419600-110429400	Weak transcription	Fetal Brain Male	brain
32	chr13:110419600-110429600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr13:110420000-110425800	Strong transcription	Muscle Satellite Cultured Cells	--
34	chr13:110420000-110429000	Weak transcription	Fetal Brain Female	brain
35	chr13:110420200-110425400	Strong transcription	Fetal Intestine Small	intestine
36	chr13:110420400-110429200	Weak transcription	Right Atrium	heart
37	chr13:110420800-110428000	Strong transcription	HSMM	muscle
38	chr13:110420800-110429000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr13:110421400-110428800	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr13:110421600-110426200	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr13:110422000-110427000	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr13:110422000-110429000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr13:110422400-110425200	Strong transcription	Hela-S3	cervix
44	chr13:110423000-110433400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr13:110423200-110426600	Strong transcription	Liver	Liver
46	chr13:110423200-110428200	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr13:110423200-110428800	Weak transcription	Rectal Smooth Muscle	rectum
48	chr13:110423200-110428800	Weak transcription	NHEK	skin
49	chr13:110423200-110430200	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr13:110423200-110430400	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links