Variant report

Variant	rs55758877
Chromosome Location	chr2:182742734-182742735
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:182720599..182723528-chr2:182741672..182744173,2	K562	blood:
2	chr2:182741418..182743213-chr2:182749942..182752265,2	MCF-7	breast:
3	chr2:182741606..182744007-chr2:182744927..182746592,2	MCF-7	breast:
4	chr2:182737972..182741576-chr2:182742181..182745025,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10166975	0.84[EUR][1000 genomes]
rs10189187	0.87[EUR][1000 genomes]
rs10191082	0.84[EUR][1000 genomes]
rs10197254	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10201303	0.87[EUR][1000 genomes]
rs13389121	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13401364	0.87[EUR][1000 genomes]
rs1528024	0.84[EUR][1000 genomes]
rs1528025	0.84[EUR][1000 genomes]
rs1528026	0.84[EUR][1000 genomes]
rs1528027	0.84[EUR][1000 genomes]
rs16867498	0.87[EUR][1000 genomes]
rs16867509	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17456384	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2059702	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2288330	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2303554	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2368235	0.88[EUR][1000 genomes]
rs3731693	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3815877	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3815878	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4597477	0.84[EUR][1000 genomes]
rs55732891	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6707164	0.84[EUR][1000 genomes]
rs6707654	0.84[EUR][1000 genomes]
rs6720109	0.84[EUR][1000 genomes]
rs6723011	0.84[EUR][1000 genomes]
rs6735322	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6736341	0.84[EUR][1000 genomes]
rs6736766	0.84[EUR][1000 genomes]
rs6739707	0.84[EUR][1000 genomes]
rs6744556	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6751464	0.84[EUR][1000 genomes]
rs6751685	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6754192	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6754819	0.84[EUR][1000 genomes]
rs6755017	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73032623	0.87[EUR][1000 genomes]
rs7563333	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7603721	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7606321	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7608942	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv834478	chr2:182654811-182843201	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv834479	chr2:182738483-182905444	Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182741800-182743200	Weak transcription	HUVEC	blood vessel
2	chr2:182741800-182743200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr2:182741800-182746600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr2:182742400-182744400	Enhancers	Hela-S3	cervix

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