Variant report

Variant	rs55759320
Chromosome Location	chr15:74728365-74728366
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74720298..74721801-chr15:74727091..74728921,2	MCF-7	breast:
2	chr15:74727453..74729431-chr15:74732496..74734261,2	K562	blood:
3	chr15:74665092..74667430-chr15:74726842..74729796,2	K562	blood:
4	chr15:74681432..74683884-chr15:74728087..74731216,4	K562	blood:
5	chr15:74727843..74730668-chr15:74907204..74909130,2	K562	blood:
6	chr15:74694166..74696263-chr15:74727466..74729822,2	MCF-7	breast:
7	chr15:74666968..74670060-chr15:74726920..74730762,3	K562	blood:

Variant related genes	Relation type
ENSG00000260919	Chromatin interaction
ENSG00000179335	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11855262	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11858456	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28362880	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8023274	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8031284	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8042206	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
2	nsv904356	chr15:74697084-74729603	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv542433	chr15:74714265-74745033	Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv904371	chr15:74719249-74731330	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74726200-74736800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:74726400-74737200	Weak transcription	Hela-S3	cervix
3	chr15:74726800-74728600	Enhancers	Primary B cells from peripheral blood	blood
4	chr15:74726800-74728800	Enhancers	Fetal Brain Male	brain
5	chr15:74726800-74729000	Enhancers	Primary hematopoietic stem cells	blood
6	chr15:74726800-74729000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:74726800-74730600	Weak transcription	NHEK	skin
8	chr15:74726800-74730800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:74726800-74730800	Weak transcription	HMEC	breast
10	chr15:74726800-74736800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr15:74726800-74737400	Weak transcription	Esophagus	oesophagus
12	chr15:74726800-74738600	Weak transcription	Fetal Lung	lung
13	chr15:74726800-74740200	Weak transcription	A549	lung
14	chr15:74726800-74752800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:74727000-74728600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:74727000-74729000	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr15:74727000-74729200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:74727000-74731200	Enhancers	K562	blood
19	chr15:74727000-74734400	Weak transcription	Pancreas	Pancrea
20	chr15:74727000-74736600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr15:74727000-74736600	Weak transcription	Right Atrium	heart
22	chr15:74727000-74736800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr15:74727000-74736800	Weak transcription	Colon Smooth Muscle	Colon
24	chr15:74727000-74737400	Weak transcription	Lung	lung
25	chr15:74727000-74737600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr15:74727200-74728800	Enhancers	Thymus	Thymus
27	chr15:74727200-74729200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr15:74727200-74729800	Enhancers	Fetal Thymus	thymus
29	chr15:74727200-74730600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr15:74727200-74730600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr15:74727200-74730800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:74727200-74731200	Weak transcription	HSMMtube	muscle
33	chr15:74727200-74735000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr15:74727200-74735200	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr15:74727200-74735400	Weak transcription	Brain Anterior Caudate	brain
36	chr15:74727200-74735600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr15:74727200-74736600	Weak transcription	Primary T cells from cord blood	blood
38	chr15:74727200-74736600	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr15:74727200-74736800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr15:74727200-74736800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr15:74727200-74737200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr15:74727200-74737200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr15:74727200-74737200	Weak transcription	Duodenum Mucosa	Duodenum
44	chr15:74727200-74737800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr15:74727200-74740600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr15:74727200-74747200	Weak transcription	NHDF-Ad	bronchial
47	chr15:74727400-74728600	Enhancers	GM12878-XiMat	blood
48	chr15:74727400-74730800	Weak transcription	HSMM	muscle
49	chr15:74727400-74734800	Weak transcription	Brain Hippocampus Middle	brain
50	chr15:74727400-74734800	Weak transcription	Osteobl	bone

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