Variant report

Variant	rs557594226
Chromosome Location	chr4:15731831-15731832
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:15731707..15732212-chr4:15806910..15807470,2	K562	blood:
2	chr4:15731303..15731853-chr4:15757889..15758739,2	MCF-7	breast:
3	chr4:15731710..15732220-chr4:15957676..15958189,2	K562	blood:
4	chr4:15683366..15684985-chr4:15730106..15732108,2	K562	blood:
5	chr4:15725851..15728771-chr4:15730886..15733232,2	K562	blood:

Variant related genes	Relation type
ENSG00000237765	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv822495	chr4:15731482-15733386	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3397695	chr4:15731652-15732075	Enhancers Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15705000-15735200	Weak transcription	Lung	lung
2	chr4:15707400-15742800	Weak transcription	Primary B cells from cord blood	blood
3	chr4:15708800-15739400	Weak transcription	Ovary	ovary
4	chr4:15719400-15735800	Weak transcription	NHDF-Ad	bronchial
5	chr4:15719800-15736600	Weak transcription	Spleen	Spleen
6	chr4:15723000-15734600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr4:15723000-15743000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr4:15723000-15744600	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr4:15724000-15732000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr4:15726000-15737400	Weak transcription	NHLF	lung
11	chr4:15726000-15740200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:15727200-15732800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr4:15727400-15740400	Weak transcription	Fetal Intestine Large	intestine
14	chr4:15729000-15743200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr4:15731000-15732800	Weak transcription	Fetal Intestine Small	intestine
16	chr4:15731200-15737200	Enhancers	Dnd41	blood
17	chr4:15731400-15732600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr4:15731600-15732000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr4:15731600-15732400	Enhancers	Fetal Thymus	thymus
20	chr4:15731800-15732000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr4:15731800-15732000	Enhancers	Brain Angular Gyrus	brain
22	chr4:15731800-15732000	Enhancers	Brain Hippocampus Middle	brain
23	chr4:15731800-15732200	Enhancers	NHEK	skin
24	chr4:15731800-15732400	Enhancers	Primary T cells from cord blood	blood
25	chr4:15731800-15732400	Enhancers	Primary hematopoietic stem cells	blood
26	chr4:15731800-15732400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr4:15731800-15732400	Enhancers	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links