Variant report

Variant	rs55759903
Chromosome Location	chr4:1132518-1132519
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:1126081..1129732-chr4:1131607..1134073,3	K562	blood:
2	chr4:1131708..1133487-chr4:1242151..1243883,2	MCF-7	breast:
3	chr4:1131739..1134293-chr4:1282978..1285245,2	K562	blood:

Variant related genes	Relation type
ENSG00000251652	Chromatin interaction
ENSG00000090316	Chromatin interaction
ENSG00000196810	Chromatin interaction
ENSG00000159692	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs55644007	1.00[AMR][1000 genomes]
rs55676333	1.00[AMR][1000 genomes]
rs55752278	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56047112	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56173468	1.00[AMR][1000 genomes]
rs56265368	1.00[AMR][1000 genomes]
rs56896955	1.00[AFR][1000 genomes]
rs57265466	1.00[AMR][1000 genomes]
rs57280685	1.00[AMR][1000 genomes]
rs59830952	1.00[AMR][1000 genomes]
rs61167830	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73061799	1.00[AMR][1000 genomes]
rs73063716	1.00[AMR][1000 genomes]
rs73063723	1.00[AMR][1000 genomes]
rs73072277	1.00[AMR][1000 genomes]
rs73074159	1.00[AMR][1000 genomes]
rs73792265	1.00[AMR][1000 genomes]
rs73792270	1.00[AMR][1000 genomes]
rs73792282	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73793104	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73793105	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73793106	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73793108	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73793931	1.00[AMR][1000 genomes]
rs73793932	1.00[AMR][1000 genomes]
rs73794431	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794432	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794438	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794439	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7685842	1.00[AMR][1000 genomes]
rs7686048	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv822425	chr4:540105-1413799	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
2	nsv530490	chr4:614355-1399150	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv536980	chr4:827866-1167377	Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv1009619	chr4:901897-1215657	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv1003876	chr4:927509-1191316	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv1000381	chr4:927509-1198766	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	esv3339080	chr4:970630-1546223	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
8	nsv1004727	chr4:1015652-1158207	Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
9	nsv536984	chr4:1015652-1158207	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv1005990	chr4:1015652-1167619	Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv1012892	chr4:1086871-1176630	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
12	nsv829835	chr4:1097586-1304239	Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:1124800-1149600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:1131800-1132600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr4:1131800-1133000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr4:1132000-1133000	Enhancers	Primary monocytes fromperipheralblood	blood

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