Variant report

Variant	rs55760854
Chromosome Location	chr6:13206732-13206733
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13206187..13208549-chr6:13306945..13308625,2	K562	blood:
2	chr6:13203383..13206957-chr6:13207138..13210115,4	K562	blood:
3	chr11:64880804..64883495-chr6:13205397..13206917,2	K562	blood:

Variant related genes	Relation type
ENSG00000149809	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10484269	0.81[AMR][1000 genomes]
rs3864313	0.86[AFR][1000 genomes]
rs3864314	0.88[AFR][1000 genomes]
rs3864315	0.88[AFR][1000 genomes]
rs3886292	0.81[AFR][1000 genomes]
rs3932443	0.86[AFR][1000 genomes]
rs3932444	0.86[AFR][1000 genomes]
rs73725623	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9349503	0.88[AFR][1000 genomes]
rs9381820	0.86[AFR][1000 genomes]
rs9395526	0.86[AFR][1000 genomes]
rs9395527	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13178800-13217400	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:13182000-13211800	Weak transcription	Fetal Brain Female	brain
3	chr6:13182000-13212000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:13182000-13230000	Weak transcription	Brain Angular Gyrus	brain
5	chr6:13183000-13207000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:13184000-13220800	Weak transcription	Brain Germinal Matrix	brain
7	chr6:13187400-13217400	Weak transcription	Right Atrium	heart
8	chr6:13191800-13210800	Weak transcription	Fetal Heart	heart
9	chr6:13192400-13216800	Weak transcription	Fetal Intestine Small	intestine
10	chr6:13195800-13207400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:13198800-13206800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:13201400-13216200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:13201600-13209000	Weak transcription	Ovary	ovary
14	chr6:13201600-13215600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:13202400-13213200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:13202400-13218400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:13202800-13207800	Strong transcription	Brain Anterior Caudate	brain
18	chr6:13203000-13216800	Weak transcription	Adipose Nuclei	Adipose
19	chr6:13203200-13207800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:13203200-13230200	Weak transcription	Fetal Stomach	stomach
21	chr6:13203600-13217400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:13203800-13209000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:13204000-13207200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr6:13204000-13209000	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr6:13204600-13207000	Weak transcription	Brain Substantia Nigra	brain
26	chr6:13204600-13210200	Strong transcription	Stomach Smooth Muscle	stomach
27	chr6:13204800-13208200	Strong transcription	Lung	lung
28	chr6:13205000-13214400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:13205200-13208000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:13205200-13208600	Strong transcription	Left Ventricle	heart
31	chr6:13205400-13217400	Weak transcription	HSMM	muscle
32	chr6:13205800-13207800	Strong transcription	Aorta	Aorta
33	chr6:13205800-13208200	Strong transcription	Pancreas	Pancrea
34	chr6:13205800-13209000	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr6:13206000-13206800	Weak transcription	Primary hematopoietic stem cells	blood
36	chr6:13206200-13207800	Strong transcription	Brain Hippocampus Middle	brain
37	chr6:13206200-13208600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:13206400-13211800	Weak transcription	Gastric	stomach
39	chr6:13206400-13211800	Weak transcription	Right Ventricle	heart
40	chr6:13206400-13217400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:13206400-13229800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr6:13206400-13230000	Weak transcription	Brain Inferior Temporal Lobe	brain

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