Variant report

Variant	rs55760947
Chromosome Location	chr11:9614310-9614311
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9607435..9608967-chr11:9612770..9614781,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166483	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10500708	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2872220	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60132682	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7113837	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9630154	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9597000-9622000	Weak transcription	Spleen	Spleen
2	chr11:9597200-9635000	Weak transcription	Pancreas	Pancrea
3	chr11:9597600-9615200	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:9599600-9622800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:9599800-9617000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:9599800-9622400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:9601400-9622600	Weak transcription	Right Atrium	heart
8	chr11:9601600-9622200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:9605000-9618200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:9607000-9622400	Weak transcription	Small Intestine	intestine
11	chr11:9607800-9622600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:9610200-9622600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr11:9610600-9614600	Weak transcription	Psoas Muscle	Psoas
14	chr11:9610600-9615800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:9610600-9617400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr11:9610600-9621800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr11:9610600-9622200	Weak transcription	Primary T cells from cord blood	blood
18	chr11:9610600-9622200	Weak transcription	Lung	lung
19	chr11:9610600-9622600	Weak transcription	Colonic Mucosa	Colon
20	chr11:9610600-9622600	Weak transcription	Esophagus	oesophagus
21	chr11:9610600-9622600	Weak transcription	Thymus	Thymus
22	chr11:9610600-9622800	Weak transcription	Right Ventricle	heart
23	chr11:9610600-9627200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:9610600-9635000	Weak transcription	Aorta	Aorta
25	chr11:9610800-9615800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr11:9610800-9616400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr11:9610800-9616600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:9610800-9622200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr11:9610800-9622200	Weak transcription	Adipose Nuclei	Adipose
30	chr11:9610800-9622600	Weak transcription	Brain Germinal Matrix	brain
31	chr11:9610800-9622600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr11:9611000-9616200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:9611000-9622000	Weak transcription	NHEK	skin
34	chr11:9611000-9622200	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr11:9611000-9622600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:9611200-9614800	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr11:9611200-9615800	Weak transcription	A549	lung
38	chr11:9611200-9616000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr11:9611200-9621800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr11:9611200-9622600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr11:9611200-9622600	Weak transcription	K562	blood
42	chr11:9611200-9622800	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr11:9611400-9615800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr11:9611400-9615800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:9611400-9616000	Weak transcription	Primary B cells from peripheral blood	blood
46	chr11:9611400-9617200	Weak transcription	HepG2	liver
47	chr11:9611400-9622600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:9611400-9623400	Weak transcription	Fetal Lung	lung
49	chr11:9611600-9621600	Weak transcription	Primary hematopoietic stem cells	blood
50	chr11:9611600-9622200	Weak transcription	Muscle Satellite Cultured Cells	--

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