Variant report

Variant	rs557621955
Chromosome Location	chr4:174136347-174136348
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174134665..174137165-chr4:174138818..174141532,2	K562	blood:
2	chr4:174107501..174109531-chr4:174134790..174137729,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799519	chr4:174090004-174173743	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv518900	chr4:174130503-174142874	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv527434	chr4:174134684-174136952	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174104000-174157200	Weak transcription	Ovary	ovary
2	chr4:174112800-174140000	Weak transcription	Aorta	Aorta
3	chr4:174113800-174138000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr4:174114200-174157800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr4:174114600-174155000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:174123600-174174200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr4:174125600-174144800	Weak transcription	Primary B cells from cord blood	blood
8	chr4:174125800-174139200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr4:174126000-174156400	Weak transcription	Brain Anterior Caudate	brain
10	chr4:174126400-174149800	Weak transcription	Esophagus	oesophagus
11	chr4:174126600-174155200	Weak transcription	GM12878-XiMat	blood
12	chr4:174126600-174163400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr4:174126800-174139000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr4:174127000-174139600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:174127000-174148600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr4:174127000-174163600	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr4:174127000-174163600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr4:174127400-174138200	Weak transcription	Dnd41	blood
19	chr4:174127400-174149000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr4:174127600-174138200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:174128200-174138600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:174128200-174139000	Weak transcription	Primary T cells from cord blood	blood
23	chr4:174128200-174169200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr4:174129000-174138400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr4:174130200-174139400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr4:174130800-174138200	Weak transcription	Stomach Mucosa	stomach
27	chr4:174130800-174138800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr4:174131000-174138600	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr4:174131000-174138800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr4:174131000-174139000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr4:174131200-174147800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr4:174131800-174140200	Weak transcription	Thymus	Thymus
33	chr4:174131800-174156400	Weak transcription	Fetal Intestine Small	intestine
34	chr4:174131800-174168600	Weak transcription	Gastric	stomach
35	chr4:174132000-174136400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr4:174132000-174136600	Weak transcription	Fetal Muscle Trunk	muscle
37	chr4:174132400-174138400	Enhancers	K562	blood
38	chr4:174132600-174136400	Weak transcription	Fetal Thymus	thymus
39	chr4:174132800-174150600	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr4:174133000-174138800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr4:174133000-174139000	Weak transcription	Primary hematopoietic stem cells	blood
42	chr4:174133400-174138600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr4:174133400-174138800	Weak transcription	HSMMtube	muscle
44	chr4:174133400-174138800	Weak transcription	NHLF	lung
45	chr4:174133600-174138400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr4:174133600-174138400	Weak transcription	HUVEC	blood vessel
47	chr4:174133600-174138800	Weak transcription	NHDF-Ad	bronchial
48	chr4:174133800-174138200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr4:174134000-174138400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr4:174134200-174138400	Weak transcription	Hela-S3	cervix

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