Variant report

Variant	rs55762900
Chromosome Location	chr17:46605231-46605232
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46603138..46605364-chr20:58053289..58056014,2	MCF-7	breast:
2	chr17:46599448..46601995-chr17:46604125..46606686,2	MCF-7	breast:
3	chr17:46597156..46601458-chr17:46601809..46606314,7	MCF-7	breast:
4	chr17:46568782..46571366-chr17:46604713..46607657,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12951643	0.90[EUR][1000 genomes]
rs1811330	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36087615	0.92[EUR][1000 genomes]
rs56238990	0.92[EUR][1000 genomes]
rs56315233	0.92[EUR][1000 genomes]
rs6504299	0.92[EUR][1000 genomes]
rs953732	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
2	esv3420538	chr17:46504944-46861553	Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	369 gene(s)	inside rSNPs	diseases
3	nsv908577	chr17:46584900-46704536	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	343 gene(s)	inside rSNPs	diseases
4	nsv908578	chr17:46592413-46698710	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	335 gene(s)	inside rSNPs	diseases
5	nsv908579	chr17:46592413-46727289	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
6	nsv532113	chr17:46598247-47588570	Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	453 gene(s)	inside rSNPs	diseases
7	esv2758459	chr17:46602673-46836837	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	364 gene(s)	inside rSNPs	diseases
8	esv2758694	chr17:46602673-46836837	Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	364 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46600400-46605600	Weak transcription	HSMMtube	muscle
2	chr17:46601200-46605600	Weak transcription	K562	blood
3	chr17:46601800-46605600	Weak transcription	A549	lung
4	chr17:46603600-46609000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr17:46603600-46609200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
6	chr17:46604000-46605400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr17:46604000-46606000	Enhancers	Placenta Amnion	Placenta Amnion
8	chr17:46604400-46605600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr17:46604600-46605400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr17:46604800-46605400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr17:46604800-46606000	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr17:46605000-46605400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
13	chr17:46605000-46605400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
14	chr17:46605000-46606000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr17:46605000-46606600	Bivalent Enhancer	Fetal Stomach	stomach
16	chr17:46605000-46607000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr17:46605000-46610000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
18	chr17:46605200-46605400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
19	chr17:46605200-46605400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
20	chr17:46605200-46606000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
21	chr17:46605200-46606000	Bivalent Enhancer	Fetal Lung	lung
22	chr17:46605200-46606400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr17:46605200-46606400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
24	chr17:46605200-46606400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr17:46605200-46606600	Enhancers	Fetal Kidney	kidney
26	chr17:46605200-46613000	Weak transcription	NHLF	lung

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